PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43290.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 526aa    MW: 57158.1 Da    PI: 8.6566
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43290.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05114136123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C++C+k F r  nL+ H r H
  KHN43290.1 114 FICEICNKGFQRDQNLQLHRRGH 136
                 89*******************88 PP
2zf-C2H211.80.00075190212123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H + +
  KHN43290.1 190 WKCEKCSKKYAVQSDWKAHSKIC 212
                 58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.6E-6113136No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5113136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.4E-5114136IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.845114136IPR007087Zinc finger, C2H2
SMARTSM003550.022114136IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SMARTSM0035596155185IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.1E-4178211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.6E-6185210No hitNo description
SMARTSM00355140190210IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSNSNITSCD SWSFTTENNN NGEDAAATVK QQLEMLGQLY SPNSNTSTTT NNSNGGSNAD  60
SQPPAKKKRN LPGNPGIFSF FLFISMIITR LTFSDPSAEV IALSPNTLVA TNRFICEICN  120
KGFQRDQNLQ LHRRGHNLPW KLKLRTTTEV RKRVYVCPEP SCVHHNPARA LGDLTGIKKH  180
FSRKHGDKKW KCEKCSKKYA VQSDWKAHSK ICGTKEYKCD CGTIFSRRDS FVTHRAFCDA  240
LSEENNKCNE VPKMHGSNLQ PPIIPNIVAS LPIINANNHK NPFSLPHDLM TTIPAKPFNN  300
MAAAFTRSLS STSSPSQLSS NSPNINMLVE NGLLSPHMSA TALLQKAAQM GATVNSNNNS  360
MMSSDEKSFI VTSMAPPSYG IMNHNMHNGQ QDLSQYNFNA NGMVDGGSNN GMGMGGLDMF  420
NAILDQSKAL SKIIEQNNRN STYNGVLHAM NNGKSSDPIE GGGTKGSEAV NHVMTLDLLG  480
IGGGGGDGNF YGGDQQSEIA AGDGIWRNWS NKNAGLESFS ATNSTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32186247364Zinc finger protein JACKDAW
5b3h_F1e-32186247364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43290.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553722.10.0protein indeterminate-domain 12
RefseqXP_028216112.10.0protein indeterminate-domain 12-like
SwissprotQ9FFH31e-102IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A445FKQ60.0A0A445FKQ6_GLYSO; Zinc finger protein NUTCRACKER isoform A
TrEMBLI1NBY80.0I1NBY8_SOYBN; Uncharacterized protein
STRINGGLYMA19G42280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.17e-93C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]