PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42915.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 396aa    MW: 44016.4 Da    PI: 6.7595
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42915.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-1664109147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
       KHN42915.1  64 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 109
                      899*****************************.***********996 PP
2Myb_DNA-binding55.71.1e-17116159146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
       KHN42915.1 116 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 159
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1759110IPR017930Myb domain
SMARTSM007172.9E-1463112IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-2864157IPR009057Homeodomain-like
PfamPF002498.0E-1664109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2565117IPR009057Homeodomain-like
CDDcd001672.59E-1367108No hitNo description
PROSITE profilePS5129426.929111165IPR017930Myb domain
SMARTSM007171.8E-14115163IPR001005SANT/Myb domain
PfamPF002492.2E-14116158IPR001005SANT/Myb domain
CDDcd001678.04E-12118158No hitNo description
Gene3DG3DSA:1.10.10.601.4E-20118164IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MRECPNFEDH PNNSDDVAEE GKGSYSSGED SDKVNHNANN FNDENSPNEN SNSGGSGHSK  60
LCARGHWRPA EDSKLKELVA LYGPQNWNLI AEKLEGRSGK SCRLRWFNQL DPRINRRAFS  120
EEEEERLMQA HRIYGNKWAM IARLFPGRTD NAVKNHWHVI MARKYREQSS AYRRRLSQSS  180
SVYRRVEELN TTTTTSSTLV SRNTAAAEQQ PPPPYCLNLP NNGGLANNIN MPSSPYAATP  240
FHGGVVAVAP SSGVEFGLLN GSPHMTAAKE AFSTPKLVPH IALYPQQTPL DFFSGVRSSN  300
DMVGEYFGQN DHHQPSFGFN PQYPQYVMLM QQHQQNNHNY GFSNSTAQIL GHSEASLSSV  360
AAEHRDHQNV SSDQCPPDAT TTIPPPFIDF LGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-34641647107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42915.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528578.20.0transcription factor MYB117
TrEMBLK7L3D60.0K7L3D6_SOYBN; Uncharacterized protein
STRINGGLYMA07G35581.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-76myb domain protein 105
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]