PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42695.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 296aa    MW: 32932.6 Da    PI: 6.6216
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42695.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.59.9e-05426123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC+ C+++Fs+   L  H++ H
  KHN42695.1  4 YKCKLCSRTFSNGRALGGHMKAH 26
                9*******************998 PP
2zf-C2H214.88.3e-05202224123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ Cgk+F+++  L +H + +
  KHN42695.1 202 HQCQSCGKTFRSSRALGSHRSIC 224
                 79*****************9876 PP
3zf-C2H212.40.00047234256123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp C+k+F +   L  H r+H
  KHN42695.1 234 FQCPFCSKVFGSGQALGGHKRSH 256
                 89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.2E-8327IPR007087Zinc finger, C2H2
SuperFamilySSF576671.88E-5329No hitNo description
PROSITE profilePS5015711.697431IPR007087Zinc finger, C2H2
SMARTSM003550.0084426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182202231IPR007087Zinc finger, C2H2
SuperFamilySSF576671.67E-8202256No hitNo description
PfamPF139123.8E-4202221IPR007087Zinc finger, C2H2
SMARTSM0035546202222IPR015880Zinc finger, C2H2-like
PfamPF139125.0E-11234256IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076234261IPR007087Zinc finger, C2H2
SMARTSM003550.013234256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MERYKCKLCS RTFSNGRALG GHMKAHLATL PLPPQNQQPP LSPSAAASFS SNSSSEQEQA  60
THDEKSLIYG LRENPKKCFR LADPEFDTGS VVQDRESETE SKNPTRRRSK RTRRPVNLEQ  120
KKPKLSFMES PEPVSSVSDT SPEEDVAMCL MMLSRDRWSK NNNINVVNVN DDDVVEEEEE  180
EEEEEGGRSV LEIKLRRVRG KHQCQSCGKT FRSSRALGSH RSICEGSGND SKIFQCPFCS  240
KVFGSGQALG GHKRSHLMPS SSTTANNDSV RLKESFIDLN LPAPPEDDDL SVVSDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42695.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9671230.0KC967123.1 Glycine max C2H2-type zinc finger protein 1 (ZFP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246381.10.0zinc finger protein ZAT9-like
TrEMBLA0A445M6G90.0A0A445M6G9_GLYSO; Zinc finger protein ZAT9
STRINGGLYMA01G41780.11e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-31C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]