PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN42059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 342aa MW: 37511 Da PI: 7.5375 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.9 | 4.7e-33 | 193 | 248 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGG+++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ KHN42059.1 193 KQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLH 248 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.032 | 190 | 250 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.97E-18 | 191 | 251 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-30 | 191 | 251 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-27 | 193 | 248 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.7E-8 | 195 | 246 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010092 | Biological Process | specification of organ identity | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0048449 | Biological Process | floral organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MELSLDLSLG FVPKPLSLFF ADVSANRDKV ATLDGFVQRL EEELKKVEAF KRELPLCILL 60 LNDAIARLKE EKVKCSGMQD PPLKTSSGGN KNESSEKMNW MSSAQLWSTQ KTKSRNEEDD 120 RSVPANPING NSCVLEKEGS QVPRFGLMAR ASELSHSNSK SVGGDISSGS SLLRVEVQSQ 180 PQPPQHMQQN PRKQRRCWSP ELHRRFVDAL QQLGGAQVAT PKQIRELMQV EGLTNDEVKS 240 HLQKYRLHVR RFPVSSTGQA DNGSWMSQDE SGDKSKGNNM SQSGSPQGPL TPLILGGGGG 300 GSAKGLSSPG QNSVDGEDEQ SDCRNWKGGL HHHQLEADNQ CL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-14 | 193 | 246 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-14 | 193 | 246 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-14 | 193 | 246 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-14 | 193 | 246 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00475 | DAP | Transfer from AT4G37180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN42059.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538823.1 | 0.0 | transcription factor HHO5 | ||||
Refseq | XP_028188574.1 | 0.0 | transcription factor HHO5-like | ||||
TrEMBL | A0A445HXR4 | 0.0 | A0A445HXR4_GLYSO; Transcription factor HHO5 | ||||
TrEMBL | I1LHG8 | 0.0 | I1LHG8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G06230.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 2e-58 | G2-like family protein |
Publications ? help Back to Top | |||
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