PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41028.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 643aa    MW: 73313.3 Da    PI: 5.0667
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41028.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.81.7e-5651321128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rd+ky++g+r+nratksgyWkatgkd++v s + 
  KHN41028.1   5 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFYSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNS-QA 101
                 79****************************.99***************6434445667**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 ++vg+kktLv+y+grap+g++t+Wvmheyrl
  KHN41028.1 102 RAVGMKKTLVYYRGRAPHGSRTNWVMHEYRL 132
                 99***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-643155IPR003441NAC domain
PROSITE profilePS5100561.0975155IPR003441NAC domain
PfamPF023658.9E-306132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MAPVLPPGFR FHPTDEELVA YYLKRKINGR KIELEIIPEV DLYKCEPWDL PGKSLLPGKD  60
LEWYFYSPRD RKYPNGSRTN RATKSGYWKA TGKDRKVNSQ ARAVGMKKTL VYYRGRAPHG  120
SRTNWVMHEY RLDERECETN SGLQDAYALC RVVKKTAVIP PKVGEHHYVN VPNANQITSD  180
HSSSIEIYPE GRGEDLDSTN YFMPVDACSP HNMGNETSLT INSGIMTRDH EKWSHFSSQD  240
PLFSLPTSSF SKFGAIAYPP SKVDIALEYA RMQHRFVLPP LEVDDFPQVG ISELKMTQAS  300
GSMQGSRTET DILQEILSVA QVSQELINQS NYSQEWGGNN DNYAPREDDF TFMVGTNYNH  360
SNHGMSSMRY ADKTWEDANT RTIEIGDVDE EFKAERMVEN LRWVGMSSED LQKMEEQKIV  420
PIEDISSFQT NEVQESEQHS NKEHNDDTEI NDFSLGFIND NDDPNENFIE DGNIDDYSSS  480
PSFEVVEEIK VNHGMLVSTH QVVETFFHQI VPSQTVQVHL INSVMAHNNH YVENAEAMLM  540
IMENKGSSLR NKVKAYVMGK LIKPSKTIAS AIVFVFALVL MHCVYLKEEV EIWNESNNEV  600
NWFVGVKSHE KELSAVLKKI GIFLTISLAF CTMWASQNMV VNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-57515720170NAC domain-containing protein 19
3swm_B3e-57515720170NAC domain-containing protein 19
3swm_C3e-57515720170NAC domain-containing protein 19
3swm_D3e-57515720170NAC domain-containing protein 19
3swp_A3e-57515720170NAC domain-containing protein 19
3swp_B3e-57515720170NAC domain-containing protein 19
3swp_C3e-57515720170NAC domain-containing protein 19
3swp_D3e-57515720170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41028.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028215683.10.0NAC domain-containing protein 86-like isoform X1
TrEMBLA0A445LT500.0A0A445LT50_GLYSO; NAC domain-containing protein 86
STRINGGLYMA02G40750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-162NAC domain containing protein 28
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]