PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN39863.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 376aa MW: 41524.9 Da PI: 7.7142 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.1 | 2e-10 | 3 | 25 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +Cr+f+r G C+yG+rC++ H++ KHN39863.1 3 DICRNFQR-GSCQYGERCRYLHVQ 25 69******.*************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.4E-4 | 1 | 25 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-8 | 2 | 25 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-7 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.87E-5 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.14 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MRDICRNFQR GSCQYGERCR YLHVQQQRKP NVNGFGGQSS SYQQQNTNPF GFGSGSQQQQ 60 QQKGNPFGFG KQNSSQLNGG PHSEHKPNQY KPFENKWNRQ SSKPQQNGVK SENNSKQTDH 120 ICTDPENCKR QIAVDFEQEK PLWILTCYSH CKGAPCDIVG DISYEELRAS AYEDAKRGMN 180 LQSIVEKERN ILNSKLVEFQ KLLSEPYQIP ISSSLGSPTP QSIVANANAN PFSTSQSNGP 240 LSVSSFSQLS TPLNMGFERP SAPLTNTLTK PGFFGSGGNS LASNNAANLN SSAVFGVQSG 300 PYSTPVDLNM FPGSTQQTLT AFNNSDPTTM FQTTPDVQLS NMSQVEKVSV DPSIWLKEKW 360 NPGEIPEEAP PDTFVR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN39863.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093207 | 0.0 | BT093207.1 Soybean clone JCVI-FLGm-17A15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006590858.1 | 0.0 | zinc finger CCCH domain-containing protein 16 isoform X1 | ||||
Refseq | XP_028192106.1 | 0.0 | zinc finger CCCH domain-containing protein 16-like isoform X1 | ||||
TrEMBL | A0A445I008 | 0.0 | A0A445I008_GLYSO; Zinc finger CCCH domain-containing protein 16 isoform A | ||||
TrEMBL | I1LJ34 | 0.0 | I1LJ34_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G11630.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4600 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.2 | 1e-65 | C3H family protein |
Publications ? help Back to Top | |||
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