PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN39034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 464aa MW: 52628 Da PI: 6.8425 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.4e-07 | 339 | 386 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E ++lv+++ ++G g+W+ I r + Rt+ +++++w+++l KHN39034.1 339 WTLPEVLKLVEGISEYGVGRWTDIKRFLFsstSYRTPIDLRDKWRNLL 386 9*******************************99************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-11 | 330 | 393 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.828 | 330 | 390 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-8 | 335 | 388 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.21E-16 | 337 | 387 | No hit | No description |
SuperFamily | SSF46689 | 8.97E-16 | 338 | 406 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 5.6E-5 | 339 | 397 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 464 aa Download sequence Send to blast |
MDREEYLGKC SNMKCQRVDE SYVHALQDEV MEVEHLLAEP RNDHASLDGS LDSHTTLNGK 60 DDLELEALDG LLDDVEINDL EGTVGFPGGT CEEYFLDFGF ADKFEEVLGS GPFVGSLLQN 120 SSSESHSSGL SGSSIVDGVL ESTEVPIAQS ECKNDSLDET ITYESHGAFR NNPSQPSKVN 180 CRYNISLDIQ HLQDLDNNRH LAGGILTCKK EKGPVEKGQP AALREKRFRK PTQRYIEEFS 240 NSRSKEKAPT AGTKTKYLSD SSCDDVLHIR IKAFKKSPSE KSSIENRDVM LPELQVHKGR 300 PKKEKLEYDI ESFPLESEDE WLTSKRSRRK DRRKHQKMWT LPEVLKLVEG ISEYGVGRWT 360 DIKRFLFSST SYRTPIDLRD KWRNLLRASS AQKSTREAEQ NDELALRPLP FNVVHRVQEL 420 AKIHPYPRER GSKKLRVSQA GSSVIAKDSP PLSLSKRNVR RKFT |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 324 | 332 | KRSRRKDRR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN39034.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT098255 | 0.0 | BT098255.1 Soybean clone JCVI-FLGm-16F17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028185399.1 | 0.0 | uncharacterized protein LOC114372162 | ||||
TrEMBL | A0A445IJ17 | 0.0 | A0A445IJ17_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA10G06560.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4716 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-22 | TRF-like 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|