PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39034.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 464aa    MW: 52628 Da    PI: 6.8425
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39034.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.4e-07339386448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E ++lv+++ ++G g+W+ I r +      Rt+ +++++w+++l
       KHN39034.1 339 WTLPEVLKLVEGISEYGVGRWTDIKRFLFsstSYRTPIDLRDKWRNLL 386
                      9*******************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-11330393IPR009057Homeodomain-like
PROSITE profilePS5129413.828330390IPR017930Myb domain
SMARTSM007173.4E-8335388IPR001005SANT/Myb domain
CDDcd116602.21E-16337387No hitNo description
SuperFamilySSF466898.97E-16338406IPR009057Homeodomain-like
PfamPF139215.6E-5339397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDREEYLGKC SNMKCQRVDE SYVHALQDEV MEVEHLLAEP RNDHASLDGS LDSHTTLNGK  60
DDLELEALDG LLDDVEINDL EGTVGFPGGT CEEYFLDFGF ADKFEEVLGS GPFVGSLLQN  120
SSSESHSSGL SGSSIVDGVL ESTEVPIAQS ECKNDSLDET ITYESHGAFR NNPSQPSKVN  180
CRYNISLDIQ HLQDLDNNRH LAGGILTCKK EKGPVEKGQP AALREKRFRK PTQRYIEEFS  240
NSRSKEKAPT AGTKTKYLSD SSCDDVLHIR IKAFKKSPSE KSSIENRDVM LPELQVHKGR  300
PKKEKLEYDI ESFPLESEDE WLTSKRSRRK DRRKHQKMWT LPEVLKLVEG ISEYGVGRWT  360
DIKRFLFSST SYRTPIDLRD KWRNLLRASS AQKSTREAEQ NDELALRPLP FNVVHRVQEL  420
AKIHPYPRER GSKKLRVSQA GSSVIAKDSP PLSLSKRNVR RKFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324332KRSRRKDRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39034.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982550.0BT098255.1 Soybean clone JCVI-FLGm-16F17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028185399.10.0uncharacterized protein LOC114372162
TrEMBLA0A445IJ170.0A0A445IJ17_GLYSO; Uncharacterized protein
STRINGGLYMA10G06560.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-22TRF-like 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]