PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39015.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 297aa    MW: 32914.8 Da    PI: 8.9112
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39015.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012118140123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  KHN39015.1 118 YQCKTCNRCFPSFQALGGHRASH 140
                 9***********99999998887 PP
2zf-C2H213.80.00018203225123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  Fs+   L  H+r+H
  KHN39015.1 203 HECSICGAEFSSGQALGGHMRRH 225
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.52E-9117140No hitNo description
PROSITE profilePS5015710.305118145IPR007087Zinc finger, C2H2
PfamPF139122.9E-10118142IPR007087Zinc finger, C2H2
SMARTSM003550.08118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SuperFamilySSF576679.52E-9198225No hitNo description
Gene3DG3DSA:3.30.160.609.1E-4201225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.7E-13202226IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743203225IPR007087Zinc finger, C2H2
SMARTSM003550.01203225IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MQVQEELLVV SKDHTQMMMI KGKRTKRQRA PSPLRLAMPY NSTSSNSSTN NSIDSATTSL  60
PSPSPTNNTI EFREDQDMAN CLILLAQGRY HVAAPTPHHN NNNNDDDNLK KSTSLYLYQC  120
KTCNRCFPSF QALGGHRASH KKPKQNGTFS SEAVTNFIEE NNDRYDPTTS TTLSLKTPNG  180
VSNLCGTITA TTTTTTTKAN KVHECSICGA EFSSGQALGG HMRRHRTLVN ASMTTSMRGG  240
NVVGSNEFQE AKKPLKLDLN LPALPEDDHH RESKFSFQQR EKNVIVFSKS SLVDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028183848.10.0zinc finger protein ZAT5-like
TrEMBLA0A445IJ330.0A0A445IJ33_GLYSO; Zinc finger protein ZAT5
STRINGGLYMA10G06760.21e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-47C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]