PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38672.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 289aa    MW: 30772.7 Da    PI: 4.6468
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38672.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05264286223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C  C+ksF++   L++H +  H
  KHN38672.1 264 SCASCKKSFTNEVGLQQHKKAkH 286
                 7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.448263289IPR007087Zinc finger, C2H2
PROSITE patternPS000280265286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDAPMEFWGV EVKVGQTVTV DPMDPVDSYI HISQVALGEA KKEKPNESVV LYLKVGEQKI  60
VLGTLSRDGI PHLSLDLVLD SDSELSHTSK SASVFFCGYR VLTGGNNASD FSDSEEDEEL  120
ALEGQDNDEG AKVTKPSKPV PKIGAPAKTA DPKKDKGDDS DDESDDDLAG EDEFGSSDEM  180
DDDSDSDEES DEETPAKKVD QGKKRPNESA AKTPVSAKKA KTATPEKTNG KKNVHVATPH  240
PSKKGGKTPN STKGQSPSSA GQLSCASCKK SFTNEVGLQQ HKKAKHGGQ
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38672.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5326180.0AF532618.1 Glycine max nucleolar histone deacetylase HD2-P39 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186825.10.0histone deacetylase HDT1-like
SwissprotQ8LJS21e-171HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A445I4830.0A0A445I483_GLYSO; Histone deacetylase HDT1
STRINGGLYMA11G19480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-20histone deacetylase 2C
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]