PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38397.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 262aa    MW: 30508.7 Da    PI: 8.7599
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38397.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35151062102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw +++++fvv  + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++F+kg k+ll++i+
    KHN38397.1  15 FLTKTYQLVDDPHTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAADR---------WEFANEYFRKGAKHLLCEIH 102
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
    KHN38397.1 103 RRKT 106
                   **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.1E-38699IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5611104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.68E-3312104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.7E-3215104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVFTMESHKS VPAPFLTKTY QLVDDPHTDH IVSWGDDETT FVVRRPPEFA RDLLPNYFKH  60
NNFSSFVRQL NTYGFKKVAA DRWEFANEYF RKGAKHLLCE IHRRKTPHHY QQHYHMHDQP  120
PQLLQPDENM CWIDAPPLPS PKPGTDILAA LSEDNQRLRR KNFMLLSELT HMKNLYNDII  180
YFIQNHVSPA ASYDEQRSRS AILKMVELDS SPNVIRPTKS RIMEKSLVTN SSDEPNNSSV  240
KLFGVPLCGK KRLHPGNLVQ QE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-20510611122Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38397.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0925440.0BT092544.1 Soybean clone JCVI-FLGm-11O9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518479.10.0heat stress transcription factor B-4b
RefseqXP_028219424.10.0heat stress transcription factor B-4b-like
SwissprotQ9C6356e-87HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A445LV800.0A0A445LV80_GLYSO; Heat stress transcription factor B-4
TrEMBLI1JIV90.0I1JIV9_SOYBN; Uncharacterized protein
STRINGGLYMA02G44670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-85heat shock transcription factor B4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]