PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38063.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 296aa    MW: 33927.2 Da    PI: 7.7652
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38063.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.28.2e-133692155
         AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa+a++ a++k++g
  KHN38063.1 36 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQSKKGRQGAYDDEEAAARAYDLAALKYWG 92
                57*******************99998888888888********************98 PP
2AP2538.8e-17135186155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  KHN38063.1 135 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDMAAIEYRG 186
                 89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-1536102IPR016177DNA-binding domain
PfamPF008479.5E-93692IPR001471AP2/ERF domain
SMARTSM003804.3E-2237106IPR001471AP2/ERF domain
PROSITE profilePS5103219.01937100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-1337102IPR001471AP2/ERF domain
PRINTSPR003673.0E-63849IPR001471AP2/ERF domain
CDDcd000185.87E-15135196No hitNo description
SuperFamilySSF541718.5E-18135196IPR016177DNA-binding domain
PfamPF008472.6E-12135186IPR001471AP2/ERF domain
SMARTSM003803.2E-24136200IPR001471AP2/ERF domain
PROSITE profilePS5103218.268136194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17136195IPR001471AP2/ERF domain
PRINTSPR003673.0E-6176196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAKKSQKSLK NNNNNNTTRK RTRKSVPRDS PPQRSSIYRG VTRHRWTGRY EAHLWDKNCW  60
NESQSKKGRQ GAYDDEEAAA RAYDLAALKY WGQDTILNFP LSNYEEKLKE MEGQSKEEYI  120
GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ EEAAAAYDMA  180
AIEYRGLNAV TNFDLSRYIN WPRPKTEENH QNTPSNQNVN SNAELELGSA SDEITEEGVA  240
RSSESESNPS RRTFPEDIQT IFENNQDSGI YIENDDIIFG DLGSFGAPIF HFELDV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38063.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585655.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
RefseqXP_028245554.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-118AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLI1KVP70.0I1KVP7_SOYBN; Uncharacterized protein
STRINGGLYMA08G23630.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-99ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]