PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN37527.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 772aa MW: 86354.9 Da PI: 7.0242 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 100.8 | 1.1e-31 | 114 | 185 | 7 | 77 |
---.--TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 7 Cea.dlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 C++ +se+k yhrrh+vC +++a++v+++g+ +r+CqqC++fh ls+fDe+krsCrr+L++hn rrr+k KHN37527.1 114 CQVpAISELKGYHRRHRVCLRCANAATVMLNGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKP 185 4432589************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.1E-22 | 109 | 171 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 25.162 | 111 | 184 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-28 | 113 | 186 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.3E-23 | 114 | 184 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 772 aa Download sequence Send to blast |
MEPLSLPPLP VMDDAEDPSS IWDFSYLLDF DLDDQDIIIN NNNSLPLPLN DHPAPSEIPQ 60 NDRVRKRDPR LTCSNFLAGR VPCACPELDA ILEDEGLPGK KRARTARASA SARCQVPAIS 120 ELKGYHRRHR VCLRCANAAT VMLNGEAKRY CQQCGKFHVL SDFDEGKRSC RRKLERHNTR 180 RRRKPTADSG GATHSELLQP VAENEENNYD VEAGKDCSNL STDINDVGVS LDLEDEPAPI 240 PSSAPEAQNI NSDSVVSLAV SGETRVNSGN TSNSPSYCDN KSAYSSMCQT GRISFKLYDW 300 NPAEFPRRLR HQIFQWLASM PVELEGYIRP GCTILTIFIA MPNIMWINLL KDPLEYVHDI 360 VAPGKMLSGR GTALVHLNDM IFRVMKDGTS VTNVKVNMHA PKLHYVHPTY FEAGKPMEFV 420 ACGSNLLQPK FRLLVSFSGK YLKCEYCVPS PHSWTEDNIS CAFDNQLYKI YVPHTEESLF 480 GPAFIEVENE SGLSNFIPVL IGDKKICTEM KTLQQKLDVS LLSKQFRSAS GGSICSSCET 540 FALSHTSSSD LLVDIAWLLK DTTSENFDRV MTASQIQRYC HLLDFLICND STIILGKILP 600 NLMILTESMK SNVVINRTSD VDIMQLLNHI HNARNAVYQK HPKSESIIVH SEMKGFILAQ 660 GCSQDNKLSV AINSQGIQSR ADEKWGVLKV KSPTSNEKME RIPLLKRDII MSMEELPERY 720 GRRCLGRGFL TFRPAIFVLV SVAVCLGVCV AVLHPGRVSE LAVSVRRCLF NY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 2e-38 | 112 | 191 | 4 | 86 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 182 | RRKLERHNTRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN37527.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028189309.1 | 0.0 | squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A445I7Y8 | 0.0 | A0A445I7Y8_GLYSO; Squamosa promoter-binding-like protein 7 | ||||
STRING | GLYMA13G28460.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6470 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.1 | 0.0 | squamosa promoter binding protein-like 7 |
Publications ? help Back to Top | |||
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