PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN35655.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 327aa MW: 36191.6 Da PI: 7.99 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55 | 1.4e-17 | 164 | 218 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k KHN35655.1 164 RKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 218 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.2 | 7.3e-41 | 164 | 254 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk KHN35655.1 164 RKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 254 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-17 | 157 | 223 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.151 | 160 | 220 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-18 | 161 | 229 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.3E-15 | 162 | 224 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.01E-15 | 164 | 221 | No hit | No description |
Pfam | PF00046 | 4.5E-15 | 164 | 218 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 195 | 218 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 6.9E-11 | 220 | 254 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 7.8E-26 | 220 | 263 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MELALSLGDT SKSFTFLDKA VTLPPNKDPP GFCLAPSFAE KRSDSERGTA SGSSDPPVQL 60 DLLPFSPVLR PQQHPPSHLR IPWLTQACGG AARVLDVNLF PAATAEDGDD GTSLSSSPNS 120 AVSPFQMDFC TRNGNAAEFG SRNKREQQEA EGRASDDDEN GSTRKKLRLS KEQSAFLEES 180 FKEHTTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK RCCETLTEEN 240 RRLQKELQEL RALKSSQPFY MQLPATTLTM CPSCERVATN STTTNQTSIV NNNASSQIPV 300 ELSLSKPRIL PFPNGQVQAQ AHQIASS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 168 | TRKKLRL |
2 | 212 | 220 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN35655.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-100 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003533912.1 | 0.0 | homeobox-leucine zipper protein HOX11 | ||||
Refseq | XP_028179764.1 | 0.0 | homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | P46665 | 2e-86 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A0B2RRA9 | 0.0 | A0A0B2RRA9_GLYSO; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | I1L2K9 | 0.0 | I1L2K9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G16790.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2335 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-72 | homeobox from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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