PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN32794.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 521aa MW: 57523.1 Da PI: 6.1995

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN32794.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.7e-07	274	295	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H KHN32794.1 274 FCTICGKGFKRDANLRMHMRGH 295 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.29E-5	271	298	No hit	No description
SMART	SM00355	0.0026	273	295	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.03	273	300	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.1E-5	274	323	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	275	295	IPR007087	Zinc finger, C2H2
SMART	SM00355	47	321	354	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	21	359	381	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MDSNGSLRAN TWARSSSLTS PASGLSSDPL SFPGFGLQHN QQKWDVPSNS DFGIRAEAPF 60 KEFNQPSQTQ SPLPCNSNNE IEIPGQENCH LSESSQTNTL QDWDPSVMLN NLSFLEEKIH 120 QLQDLVHLIA RQKGIGQPNE LVTQEQQLVT TDLTSIIIQL ISTAGSLLPS ARHNLVNTSS 180 LVGQIDQLRG TTIPPGTGAS NGCIQPQNNG GKILSDQSMQ TDLPNSGEME QKYNMVEHDL 240 KDEEDVEDGE NLAPGSYEIL QLEKEEILAP HTHFCTICGK GFKRDANLRM HMRGHGDEYK 300 TPAALAKPHK ESASPKPIKR YSCPYPGCKR NKDHKKFQPL KTILCVKNHY KRTHCDKSYT 360 CSRCNTKKFS VMADLKTHEK HCGKDKWLCS CGTTFSRKDK LFGHIALFQG HAPAIPLDDT 420 KGAGVAEAPI HDSKENNSKV QSMNFTFGSN PSNANEVPNA MDVKGDSDDP INYFSSLNFE 480 ANFGEFNEFT RPLFDDPEGS FSFVMPGSFK SGGESSSDNL L

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MDSNGSLRAN TWARSSSLTS PASGLSSDPL SFPGFGLQHN QQKWDVPSNS DFGIRAEAPF  60
KEFNQPSQTQ SPLPCNSNNE IEIPGQENCH LSESSQTNTL QDWDPSVMLN NLSFLEEKIH  120
QLQDLVHLIA RQKGIGQPNE LVTQEQQLVT TDLTSIIIQL ISTAGSLLPS ARHNLVNTSS  180
LVGQIDQLRG TTIPPGTGAS NGCIQPQNNG GKILSDQSMQ TDLPNSGEME QKYNMVEHDL  240
KDEEDVEDGE NLAPGSYEIL QLEKEEILAP HTHFCTICGK GFKRDANLRM HMRGHGDEYK  300
TPAALAKPHK ESASPKPIKR YSCPYPGCKR NKDHKKFQPL KTILCVKNHY KRTHCDKSYT  360
CSRCNTKKFS VMADLKTHEK HCGKDKWLCS CGTTFSRKDK LFGHIALFQG HAPAIPLDDT  420
KGAGVAEAPI HDSKENNSKV QSMNFTFGSN PSNANEVPNA MDVKGDSDDP INYFSSLNFE  480
ANFGEFNEFT RPLFDDPEGS FSFVMPGSFK SGGESSSDNL L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN32794.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001235617.2	0.0	C2H2 zinc finger domain-containing protein
Refseq	XP_028207127.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
Swissprot	Q9C8N5	1e-171	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A0B2RKF7	0.0	A0A0B2RKF7_GLYSO; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	I1MNY2	0.0	I1MNY2_SOYBN; Uncharacterized protein
STRING	GLYMA16G27280.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5340	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-164	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]