PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN32454.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 356aa    MW: 40969.7 Da    PI: 7.9467
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN32454.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-5391381129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                 +ppGfrFhPtdeel+++yLkkk++ +k+++ +vi+evd++k+ePwdL++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + +
  KHN32454.1   9 VPPGFRFHPTDEELLHYYLKKKLSFQKFDM-DVIREVDLNKMEPWDLQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN-S 105
                 69****************************.99**************963433332556*************************************9.8 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                  +++g++ktLvfykgrap+g+ktdW+mheyrle
  KHN32454.1 106 YKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 138
                 999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-608160IPR003441NAC domain
PROSITE profilePS5100557.9469160IPR003441NAC domain
PfamPF023651.0E-2710137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGSSTNGGVP PGFRFHPTDE ELLHYYLKKK LSFQKFDMDV IREVDLNKME PWDLQERCRI  60
GSTPQNEWYF FSHKDRKYPT GSRTNRATNA GFWKATGRDK CIRNSYKKIG MRKTLVFYKG  120
RAPHGQKTDW IMHEYRLEDG NDPQGSANED GWVVCRVFKK KNLFKIVNEG GSTHNPDQQI  180
NNSSNTNARS YRENHYLLHQ QQNPRNSSGL ELDKPELALH YPHLQNPPYS LFQSQPLLQI  240
QKPMVYDYSY TSDTPIMAKQ LMTNPRDCES GSDGLRYQVS ESGMEVGSCE PNQEMGTGRG  300
EGINEWGVLD RLVTSHLGNE DSSKGVRFEE ANPPSVHQIN QLSLRGEMDF WAYGKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-53516213167NO APICAL MERISTEM PROTEIN
1ut4_B7e-53516213167NO APICAL MERISTEM PROTEIN
1ut7_A7e-53516213167NO APICAL MERISTEM PROTEIN
1ut7_B7e-53516213167NO APICAL MERISTEM PROTEIN
3swm_A8e-53516216170NAC domain-containing protein 19
3swm_B8e-53516216170NAC domain-containing protein 19
3swm_C8e-53516216170NAC domain-containing protein 19
3swm_D8e-53516216170NAC domain-containing protein 19
3swp_A8e-53516216170NAC domain-containing protein 19
3swp_B8e-53516216170NAC domain-containing protein 19
3swp_C8e-53516216170NAC domain-containing protein 19
3swp_D8e-53516216170NAC domain-containing protein 19
4dul_A7e-53516213167NAC domain-containing protein 19
4dul_B7e-53516213167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN32454.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-134AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540565.10.0protein BEARSKIN2
RefseqXP_028193925.10.0protein BEARSKIN2-like
SwissprotQ9SV871e-151BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A0B2RJF10.0A0A0B2RJF1_GLYSO; Protein BEARSKIN1
TrEMBLI1LNQ40.0I1LNQ4_SOYBN; Uncharacterized protein
STRINGGLYMA12G00540.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-145NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]