PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30362.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 460aa    MW: 50947.1 Da    PI: 6.7034
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30362.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.34e-09173215345
                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                 + k  rr+++NReAAr+sR+RK a++++Le    +L++  ++L
  KHN30362.1 173 DQKTLRRLAQNREAARKSRLRKMAYVQQLESSRLKLTQLEQEL 215
                 568899************************9777777666544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-7166218No hitNo description
SMARTSM003381.9E-7171240IPR004827Basic-leucine zipper domain
PfamPF077168.1E-5171218IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.105173217IPR004827Basic-leucine zipper domain
CDDcd147081.46E-20175227No hitNo description
SuperFamilySSF579591.27E-6175218No hitNo description
PROSITE patternPS000360178193IPR004827Basic-leucine zipper domain
PfamPF141442.4E-31258332IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MGSRSRTVNV NTKDTDKVLN GMPSYAPPLP SSSNSMAMEA TNAHPSRISE FGTLEQSLGF  60
RVEDTINLSR NPMFNQMKSN SQALGADIQF GALNKSIATS DINLSAAIAA SQALVFQKDS  120
QPTLASTSAG RENWGETNMA DASPRTDTST DDTEDKNQRP ERDESSGSKD KSDQKTLRRL  180
AQNREAARKS RLRKMAYVQQ LESSRLKLTQ LEQELQRSRQ QGIFISSTGD QAQSMSGNGA  240
MAFDVEYARW LEEHNRQTNE LRAAINSHAG DIELRTIVDN FMTQFDDIFR LKGIAAKADV  300
FHILSGMWKT PAERCFMWIG GFRPSELFKL LLSQLEPLAE QQLMGIYNLQ QSSQQTEDAL  360
SQGMDALQQS LSETLANGSP SSSGSSGNVA NYMGQMAMAM GKLGTLEGFL HQADNLRQRT  420
LEVMLQILTT RQSARALLAI SDYFSRLRAL SSLWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30362.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026090.0AF402609.1 Phaseolus vulgaris TGA-type basic leucine zipper protein TGA2.2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576781.10.0transcription factor TGA2.3 isoform X2
RefseqXP_028225197.10.0transcription factor TGA2.3-like isoform X1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A0B2RET50.0A0A0B2RET5_GLYSO; TGACG-sequence-specific DNA-binding protein TGA-2.1
STRINGGLYMA03G28320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-141TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]