PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN30199.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 264aa MW: 29857.2 Da PI: 5.7225 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv v ++G ++W+ Ia+ g++Rt+k+c++rw +yl KHN30199.1 8 KGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.4e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ KHN30199.1 61 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTLM 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.206 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-29 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-14 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-15 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.30E-10 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 26.957 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-17 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.65E-12 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MVQQEVRKGP WTEQEDFKLV SFVGLFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPGLK 60 RGKMTPQEER LVLELHSKWG NRWSRIARKL PGRTDNEIKN YWRTLMRKKA QEKKRGEAAS 120 SSPTPSSVDS SISSNNHAVD PHASKKAGEE SFYDTGGDNG VIAATQDQGQ KGDQQGLFSM 180 DDIWKDIDNM SEENNTTLQP VSVYDGHSEE GCNFSCPPQV PSPSSWEYSS SDPLWVMDEE 240 SLFCPLSEEP YFSCYAQGTV FLTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-29 | 5 | 110 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN30199.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096687 | 0.0 | BT096687.1 Soybean clone JCVI-FLGm-21E3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006593490.1 | 0.0 | MYB transcription factor MYB139 isoform X2 | ||||
Swissprot | Q9LX82 | 3e-84 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | K7M3C0 | 0.0 | K7M3C0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G40830.4 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 4e-80 | myb domain protein 48 |
Publications ? help Back to Top | |||
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