PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29338.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 686aa    MW: 77447.2 Da    PI: 6.7183
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29338.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-07579627247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      g+WT+ E+++++d+vk  +       W+   +t++ ++++++++s+++++
       KHN29338.1 579 GSWTEKEEKKFKDVVKSNPASlekcFWDHLFKTFP-KKSREDLVSYYFNV 627
                      79*****************99**************.9**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010140.0012161No hitNo description
PROSITE profilePS5101117.798165IPR001606ARID DNA-binding domain
SMARTSM005018.1E-5166IPR001606ARID DNA-binding domain
PfamPF013881.2E-8460IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.602.7E-13472IPR001606ARID DNA-binding domain
SuperFamilySSF467744.45E-15472IPR001606ARID DNA-binding domain
SMARTSM011899.7E-4480532IPR000949ELM2 domain
CDDcd001670.00224580628No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MMSNGDPLDL YKLFMVVKEK GGYDAVCKNK LWDLVGEEFG LGVKVGSSVE LAYSKHLSSL  60
EACLKNVADG KLPECGLVDD RVKFHKHLME AQAESLLDDS GEKEVGDGLE RRACCCPDGR  120
KLGGSNRVKG VKPESNVAEL ERVYEYLDGT KSCVSDSVKG KKSDYNGDEF DNVCDFLDGR  180
ELCGTNRVKG MSPESNGDKK VQSEGLVDLD MLDHGTDEHI IRNLCSLNTE RDILEEFDGG  240
KILTVDASDA ESNMPRLSDG SKSCDNDDDD DSDDVLILDP SGVDKEIFGR KRKRESKSEM  300
LSWITSIAKN PCDPAVGSIP EKSKWKSYSS QEIWKQALLF REAVFLKKDF ETISEQLSWQ  360
KTSLLEKKDG WRMRNYSRSG ILAHRRSGVF PCHYRGQKMH PSMYDDRVGA IYNLRQRLKC  420
DKRVLFGKAT SEGVSSASSG GTHGYLERTP SSRAEDCAEK QLPDSCTARS SLDICARVPI  480
PLGPNHQAEV PEWTDITYEV DSKWLGTQIW PLKTVNSKHH LFERDPIGEG RQDSCSCRVQ  540
GSVECVRFHI AKKRAKVKLE LGEAFHQWNL HKVGEEIGGS WTEKEEKKFK DVVKSNPASL  600
EKCFWDHLFK TFPKKSREDL VSYYFNVFLL QRRAYQNRHT PDNIDSDDDE SECTPLRKVF  660
GHHPPKARSF TLLSPKKATF KRENNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29338.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247834.10.0AT-rich interactive domain-containing protein 1-like
RefseqXP_028247835.10.0AT-rich interactive domain-containing protein 1-like
TrEMBLA0A445J6630.0A0A445J663_GLYSO; AT-rich interactive domain-containing protein 1 isoform A
STRINGGLYMA09G39361.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43731724
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]