PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29166.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 205aa    MW: 23394.5 Da    PI: 6.3952
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29166.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC148.51.4e-4658159199
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw+kq   ie++td++ h+lP arikki+kad dv+m+saeaPvl++kace+fi+elt+++w +ae+ +rr l+ksdia+a+++td+fdfl div
  KHN29166.1  58 QLNNFWAKQcqeIEETTDLRTHSLPYARIKKIMKADRDVRMVSAEAPVLFAKACEMFIMELTMKAWANAEDHRRRILQKSDIASAISKTDVFDFLEDIV 156
                 799*****99999************************************************************************************** PP

       NF-YC  97 prd 99 
                 prd
  KHN29166.1 157 PRD 159
                 *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.89E-2955152IPR009072Histone-fold
PfamPF008085.3E-2080143IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.4E-3581158IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDQNQHGQPT QEAVGKNQYQ SNPMMAPTNP PSETIGPYVT SSFPREKQHA PQDIYQEQLN  60
NFWAKQCQEI EETTDLRTHS LPYARIKKIM KADRDVRMVS AEAPVLFAKA CEMFIMELTM  120
KAWANAEDHR RRILQKSDIA SAISKTDVFD FLEDIVPRDV GIPRSSIAQN FDLSMPPHQN  180
VTYPPYYVPA MVTGRPIPDQ NHHGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-4466158395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29166.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634043.21e-154nuclear transcription factor Y subunit C-2
RefseqXP_028243926.11e-154nuclear transcription factor Y subunit C-2-like
TrEMBLA0A445JET61e-153A0A445JET6_GLYSO; Nuclear transcription factor Y subunit C-9
TrEMBLI1KTG91e-153I1KTG9_SOYBN; Uncharacterized protein
STRINGGLYMA08G15700.11e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-53nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]