PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28804.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 375aa    MW: 43081.8 Da    PI: 9.4334
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28804.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.41.2e-20953145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                kr en+  rq t++kRrngi+KKA ELS+LCd+++ +++f+++gk
  KHN28804.1  9 KRLENTNGRQATYAKRRNGIMKKAAELSILCDIDIILLMFAPNGK 53
                689****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.801153IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-27160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-222114IPR002100Transcription factor, MADS-box
CDDcd001202.67E-23254No hitNo description
PRINTSPR004041.1E-16323IPR002100Transcription factor, MADS-box
PfamPF003198.4E-181154IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGRVKLKIKR LENTNGRQAT YAKRRNGIMK KAAELSILCD IDIILLMFAP NGKPSLCRGR  60
CRASNYMNFF FHNKIKYFSS NNFEEVITKF GQLTPQERTK RKLETLEALK KTFKKLDHDV  120
NVQEFFGTSS QTIEDLSNQA KLLQTQIFGT HKRLSHWTEF DKISSVDQLG RMENSLRESL  180
DQIRTRKENV KKQQQLVSLQ CNNQVKKIRM TAQQQLQPLS WIVNDNGQNI VLPEDSNMFL  240
HKDVEGSVSS SFRSYDNYFG SSIKTDMSSS TQENGVLSDM SNIAPMRLQL NGQFPCLQYN  300
FNLLNNLKFQ PSVEINPHEN HVDYHVNEGF EAPRSSYDSN NHHGWASTSG SCGIIMFEEQ  360
LYAQASFTKV NIGFT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28804.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-58AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028221501.10.0agamous-like MADS-box protein AGL30
TrEMBLA0A0B2R9K30.0A0A0B2R9K3_GLYSO; Floral homeotic protein GLOBOSA
STRINGGLYMA20G04500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-88AGAMOUS-like 30
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]