PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28194.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 255aa    MW: 29493.5 Da    PI: 8.1297
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28194.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.41.7e-36151062102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e++++fvv+++ efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++F+kg k+ll++i+
    KHN28194.1  15 FLTKTYQLVDDPHTDHIVSWGEDETTFVVWKPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFRKGAKHLLCEIH 102
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    KHN28194.1 103 RRKA 106
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-38799IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5811104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.45E-3412104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.1E-3215104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVFTFESQKS VPAPFLTKTY QLVDDPHTDH IVSWGEDETT FVVWKPPEFA RDLLPNYFKH  60
NNFSSFVRQL NTYGFKKVVA DRWEFANEYF RKGAKHLLCE IHRRKAPQQH HQLFHDQLPS  120
QILQKDESLC WLDTPLPSSK PNTDILTALS EDNQTLRRKN FMLLSELSHM KSLYNDIIYF  180
IQNHVKSPPF EQRSSSVIPK LVELDSLHES PNDMGVLRTA KSCVVDKSLV TSTEESNSSV  240
KLFGVTLSGR KIAPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-211010416120Heat shock factor protein 1
5d5u_B3e-211010425129Heat shock factor protein 1
5d5v_B3e-211010425129Heat shock factor protein 1
5d5v_D3e-211010425129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28194.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0969820.0BT096982.1 Soybean clone JCVI-FLGm-21M20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014633688.10.0heat stress transcription factor B-4b
RefseqXP_028241504.10.0heat stress transcription factor B-4b-like
SwissprotQ7XHZ05e-84HFB4B_ORYSJ; Heat stress transcription factor B-4b
SwissprotQ9C6351e-83HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A445K0Q30.0A0A445K0Q3_GLYSO; Heat stress transcription factor B-4b
TrEMBLK7L3H60.0K7L3H6_SOYBN; Uncharacterized protein
STRINGGLYMA07G36370.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-86heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]