PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN27703.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 313aa MW: 33658.2 Da PI: 8.2277 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 128 | 150 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H KHN27703.1 128 YECKTCSRTFPSFQALGGHRASH 150 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00027 | 219 | 241 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H KHN27703.1 219 HECSICGSEFTSGQALGGHMRRH 241 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 4.4E-13 | 127 | 152 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.21E-8 | 127 | 150 | No hit | No description |
SMART | SM00355 | 0.11 | 128 | 150 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.408 | 128 | 155 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 130 | 150 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.21E-8 | 214 | 241 | No hit | No description |
SMART | SM00355 | 0.019 | 219 | 241 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.3E-11 | 219 | 243 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.263 | 219 | 246 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 221 | 241 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MLAQMDMEEL VSCNNNDATN IAKGKRTKRR LRPLSPCAVV AATTITTTTT AITAITTVMT 60 SSCSSASAGG GGSSSSTTFE EEEEDMANCL ILLAQGRVGR DPPHHHKDLC GDVKTEKGST 120 KVDHLYVYEC KTCSRTFPSF QALGGHRASH KKPKMEEKKL LSPPLLLPPL PASSSSLFNF 180 EEAKQSHMKN IISPSVSLQL GCGINKVGLN FHGNKSKIHE CSICGSEFTS GQALGGHMRR 240 HRASNNNNNI VQTTTTTTTT SNGAVDVKPR NVLELDLNLP APEDDLRDSK FQFPANPNSM 300 MLSAAPALVG CHY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN27703.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031150 | 0.0 | KT031150.1 Glycine max clone HN_CCL_170 C2H2-Zn transcription factor (Glyma12g30270.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304533.2 | 0.0 | C2H2-type zinc finger protein 3 | ||||
Refseq | XP_028192885.1 | 0.0 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A0B2R6Z2 | 0.0 | A0A0B2R6Z2_GLYSO; Zinc finger protein ZAT5 | ||||
TrEMBL | I1LTN7 | 0.0 | I1LTN7_SOYBN; C2H2-Zn transcription factor | ||||
STRING | GLYMA12G30270.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 2e-54 | C2H2 family protein |
Publications ? help Back to Top | |||
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