PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN26204.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 722aa MW: 77276 Da PI: 6.4346 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.7 | 3.3e-16 | 464 | 510 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq KHN26204.1 464 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 510 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.53E-17 | 456 | 514 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-20 | 457 | 520 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-20 | 457 | 518 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.349 | 460 | 509 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-13 | 464 | 510 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-17 | 466 | 515 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MPLYELYRLA REKLGKETTS TRAPDLCSSP ENDFFELVWE NGQISSQGQS SRVRRSPSCK 60 SLPSHCLPSH CPKVRDKDVG YGTNTRMGKF GDLDSGLNEI PMSVPSREVD FCHDEDVLPW 120 LDYTSMDGSL QHEYGSDFLH ASNSFTLLDK KSNGNMAFRD SHKTSEEQGN VFKGSSAEQV 180 ETARPKASTS QLFPPSLHQC QTSFVSSRSR ASDITENNNT SNANQDVSYG EITHILSSSS 240 DLSSAKVQKC DPPITSNGSS STIMNFSHFA RPAAMVRANL QNIGLKSGLS SARSDSMEIK 300 NKGAAATSSN PPESILVDSS GECSKEPTMQ CQQVVEQSKP DVNSLQPKSV EQNAVPSKQS 360 EPASKESATK IDQTPNQVLG DSGTKGQTAA EKSMEPAVAS SSVCSGTGAD QGSDEPNQNL 420 KRKTKDTDDS ECHSEDVEEE SAGAKKTAGG RGGAGSKRSR AAEVHNLSER RRRDRINEKM 480 RALQELIPNC NKVDKASMLD EAIEYLKTLQ LQVQIMSMGA GLYMPPMMLP AGMQHMHAPH 540 MAPFSPMGVG MHMGYGMGYG MGMPDMNGGS SRFPMIQVPQ MQGTHIPVAH MSGPTALHGM 600 ARSNPPGYGL PGQGYPMHMP PASVFPFSGG PLMNSPAQGL HARGSSGLVE TVDSASASGL 660 KDQMQNVDPQ VKQSTGGCDS TSQMPTQCEA AAVGFEQSAL AHSRGHASKA NDNGAVNPDP 720 GR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 468 | 473 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN26204.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031132 | 0.0 | KT031132.1 Glycine max clone HN_WYQ_58 bHLH transcription factor (Glyma20g22291.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006605776.1 | 0.0 | transcription factor PIF3 | ||||
Refseq | XP_028221626.1 | 0.0 | transcription factor PIF3-like | ||||
TrEMBL | A0A0B2R1U0 | 0.0 | A0A0B2R1U0_GLYSO; Transcription factor PIF3 | ||||
STRING | GLYMA20G22291.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 7e-62 | phytochrome interacting factor 3 |
Publications ? help Back to Top | |||
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