PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24247.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 315aa    MW: 35909.8 Da    PI: 5.396
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24247.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.67.5e-25180233155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr+ W  eLH +Fv+av ++ G +kA Pk+ile+m+++gLt +hv+SHLQkYR 
  KHN24247.1 180 KPRIAWKGELHCQFVKAVMHI-GLDKAQPKKILEVMNIPGLTKDHVASHLQKYRF 233
                 79*******************.********************************6 PP
2Response_reg77.83.7e-26161221107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   v+ vdD+ +++e+++q+  k +y +va+++d+++al+++ e++  +D+il+D+ +p+mdG+e+lk+i++e  ++p+i+++  g+ + + +a+  Ga 
    KHN24247.1  16 VVAVDDDTTILEIIKQMGFKCHY-RVATFSDAPDALNYVLENKdrIDVILVDVHLPNMDGYEFLKHINKEI-DIPVIIMSVDGSTSAVRKAITHGAC 110
                   5679*******************.***************665557**********************8877.9************************ PP

                   EEEESS--HHHH CS
  Response_reg  96 dflsKpfdpeel 107
                   d+ +Kpf++++ 
    KHN24247.1 111 DYWTKPFSENQF 122
                   *******99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.84E-2913132IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.6E-3314145No hitNo description
SMARTSM004486.7E-2414126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.34515130IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2216122IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.41E-2619130No hitNo description
SuperFamilySSF466897.35E-16177237IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-25178237IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-21180233IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MATEQNVSFQ FEGLWVVAVD DDTTILEIIK QMGFKCHYRV ATFSDAPDAL NYVLENKDRI  60
DVILVDVHLP NMDGYEFLKH INKEIDIPVI IMSVDGSTSA VRKAITHGAC DYWTKPFSEN  120
QFKIMWKHVA MKAWNEKKLQ KKDFSEFASS VLDANLKDQK EISSNSKESD VDDCDAQPKK  180
PRIAWKGELH CQFVKAVMHI GLDKAQPKKI LEVMNIPGLT KDHVASHLQK YRFDLKKSNE  240
VAVQQNEMQL PNSIQSTEPI DWFNPEGWTS QPDESILESV SVQSQNQQQG GGSLHVLPPP  300
LDGFRIQTDW CNMNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16179237462ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24247.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554991.10.0two-component response regulator ORR21
RefseqXP_028217351.10.0two-component response regulator ORR21-like
TrEMBLA0A0B2QXB00.0A0A0B2QXB0_GLYSO; Two-component response regulator ARR2
TrEMBLK7MWM50.0K7MWM5_SOYBN; Uncharacterized protein
STRINGGLYMA19G06751.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14524517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-61response regulator 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]