PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24171.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 687aa    MW: 77503.2 Da    PI: 5.3234
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24171.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.44.5e-5681351128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lppGfrFhPtdeelv++yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v s ++
  KHN24171.1   8 LPPGFRFHPTDEELVSYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNS-QS 104
                 79****************************.99***************6434445667**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 +++g+kktLv+y+grap+g +t Wvmheyrl
  KHN24171.1 105 RAIGMKKTLVYYRGRAPHGCRTGWVMHEYRL 135
                 9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-654158IPR003441NAC domain
PROSITE profilePS5100561.8358158IPR003441NAC domain
PfamPF023653.1E-309135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MNMAPVSLPP GFRFHPTDEE LVSYYLKRKI NGRKIELEII PEVDLYKCEP WDLPGKSLLP  60
GKDLEWYFFS PRDRKYPNGS RTNRATKSGY WKATGKDRKV NSQSRAIGMK KTLVYYRGRA  120
PHGCRTGWVM HEYRLDETQC ETNSGLQDAY ALCRVFKKTA VIPPKVGDQH YVNVLSHANQ  180
MTSDQSSSID IELYSEGRGE VLESSNYLMP WDTCPSPNIN IGSSLNININ GGTKRDNNNN  240
NTGTWSHFLS SEDLLNLPTS TSSFPNYGSM SYPPSKVDIA LECARMQHRF TMPPLEVQQD  300
FPQVGISELK MAQASASNMC GGSRNNETDI LQEILSVAHA SQELINQSNY SSAQAFGANE  360
NNYAPPHESD FTFMVGTNYN HVNDMNTMGF VDNIAWEDPN ARSIEIGDLD DGFKTERMVE  420
NLRWVGMSSK NMEKGFMEEQ KIVPIEHISN FQANREENEV QVVSEQHNSN KELNDTDIDD  480
FSMGFINTDD PNENFIDEGN IDYSNSTNFE VVEETKVSHG MFVSTRQVAD TFFHQIAPSQ  540
TVKVQLNPVL AENQSIENAV VMVNQGHSFF RKFRAYVMGK LIKPSNTIAS ALVFIFALLL  600
VHCVCLKEQV GEDLKPDPKC FDGANTMKKM RQLPAENNII WNEQEIFWSV GIKCGKGFGV  660
VLKKIGIFLT ISLALCTMWA NHVIVDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-57316015170NAC domain-containing protein 19
3swm_B1e-57316015170NAC domain-containing protein 19
3swm_C1e-57316015170NAC domain-containing protein 19
3swm_D1e-57316015170NAC domain-containing protein 19
3swp_A1e-57316015170NAC domain-containing protein 19
3swp_B1e-57316015170NAC domain-containing protein 19
3swp_C1e-57316015170NAC domain-containing protein 19
3swp_D1e-57316015170NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24171.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028196865.10.0NAC domain-containing protein 45-like isoform X1
TrEMBLA0A0B2QRC90.0A0A0B2QRC9_GLYSO; NAC domain-containing protein 45
STRINGGLYMA11G33210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-162NAC domain containing protein 28
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]