PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24104.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 579aa    MW: 65119.3 Da    PI: 5.3706
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24104.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like772.4e-24196249155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  KHN24104.1 196 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 249
                 68*******************.9*******************************8 PP
2Response_reg81.33.2e-27191271109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k +y ev+++  ++ al ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
    KHN24104.1  19 VLVVDDDPTWLKILEKMLKKCNY-EVTTCCLARHALSLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSKVMKGVQHGAC 113
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el++
    KHN24104.1 114 DYLLKPIRMKELRN 127
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23006.0E-4416168No hitNo description
SuperFamilySSF521722.99E-3516150IPR011006CheY-like superfamily
SMARTSM004488.4E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.07118133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.06E-2920133No hitNo description
SuperFamilySSF466893.76E-17194253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-28194254IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-21196249IPR006447Myb domain, plants
PfamPF002491.8E-7198248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MDNGCFSSPK RDFPAGLRVL VVDDDPTWLK ILEKMLKKCN YEVTTCCLAR HALSLLRERK  60
DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSKVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVFRKKIHEA KEFESFESIH LMRNGSELSD DGNLFAVEDV TSSKKRKDAD  180
SKHDDKECLD PSSTKKARVV WSVDLHQKFV KAVNQIGFDK VGPKKILDLM NVPWLTRENV  240
ASHLQKYRLY LSRIQKENDQ RSSSSGMKHS DFPSKDMGSF GFQNSVIKQQ NDVAIDNYNH  300
SDGSLQLQNV ETKSHEADPK GIVSQSTIAK KGRILTGNIA DTNMRESLRV GLNQTFPPLE  360
SEGNHAVFDC SMPTPYSWTE VPHMQLKEEH KSLVYLEDSF NQLPLHGKQQ QHIHVDQSQS  420
VASISSAPSI TEEEAAACIE PKPLFADYNN DYASSVSSTG NAVATFPIQP GSLIMNGQSS  480
ERISTTTSGL KTQEYNNLSS ISDQEIYQRN LLGCEAASAS LDEDLHFYWL EGECYNNMNF  540
GLQNIGMSEY YDPGLISEAP IHLYDSADYS VMDQGLFIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-18192254163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24104.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028213070.10.0two-component response regulator ARR11-like isoform X1
TrEMBLA0A0B2QVM40.0A0A0B2QVM4_GLYSO; Two-component response regulator ARR11
STRINGGLYMA11G37480.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-126response regulator 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]