PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN23993.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 467aa MW: 51601.6 Da PI: 6.7937

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN23993.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.4	6e-32	254	309	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ KHN23993.1 254 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 309 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.355	251	311	IPR017930	Myb domain
SuperFamily	SSF46689	5.38E-17	251	312	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-28	252	312	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-26	254	309	IPR006447	Myb domain, plants
Pfam	PF00249	8.2E-7	256	307	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MPSQAELSMM DYKPYSYSTL LKSFLDQTET DQTYKLEEFL SRLEEERVKI DAFKRELPLC 60 MQLLTNAVEA SRQQLQAFRS NQGTRPVLEE FMPILKHPNS QESAEKTSNI SDKANWMTSA 120 QLWSQASEGT KPQSTITSLP KEGADIGFSV SPKLALDNKH RNGGAFLPFS KERNSCQGLR 180 GLPELALASP EKEIEENKCE LEAEKCSKRE NPGKGGSCEG VNVDQGKSAS VASEAQTANT 240 TTTTTNTSGQ THRKARRCWS PDLHRRFVNA LQMLGGSQVA TPKQIRELMK VDGLTNDEVK 300 SHLQKYRLHT RRPSPSLHTG GPTPQLVVLG GIWVPPEYAT TTAAMTNSGD PTLYGPHPTS 360 QVAPPHYCAA TQMPQEFYNS ALPLSLLPPP HDYTLHHHHF HMYKTAAQTQ NSPESDIRSS 420 GDRSESIVDG KSESGKWNGE SGEKKGLAAL RDQEGEESTG SEITLKF

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MPSQAELSMM DYKPYSYSTL LKSFLDQTET DQTYKLEEFL SRLEEERVKI DAFKRELPLC  60
MQLLTNAVEA SRQQLQAFRS NQGTRPVLEE FMPILKHPNS QESAEKTSNI SDKANWMTSA  120
QLWSQASEGT KPQSTITSLP KEGADIGFSV SPKLALDNKH RNGGAFLPFS KERNSCQGLR  180
GLPELALASP EKEIEENKCE LEAEKCSKRE NPGKGGSCEG VNVDQGKSAS VASEAQTANT  240
TTTTTNTSGQ THRKARRCWS PDLHRRFVNA LQMLGGSQVA TPKQIRELMK VDGLTNDEVK  300
SHLQKYRLHT RRPSPSLHTG GPTPQLVVLG GIWVPPEYAT TTAAMTNSGD PTLYGPHPTS  360
QVAPPHYCAA TQMPQEFYNS ALPLSLLPPP HDYTLHHHHF HMYKTAAQTQ NSPESDIRSS  420
GDRSESIVDG KSESGKWNGE SGEKKGLAAL RDQEGEESTG SEITLKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-14	254	307	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-14	254	307	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-14	254	307	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-14	254	307	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269\|PubMed:25132385}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN23993.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269\|PubMed:25132385}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003528276.1	0.0	myb family transcription factor EFM
Refseq	XP_028237464.1	0.0	myb family transcription factor EFM-like
Swissprot	Q9ZQ85	1e-122	EFM_ARATH; Myb family transcription factor EFM
TrEMBL	A0A0B2QW08	0.0	A0A0B2QW08_GLYSO; Myb family transcription factor EFM
TrEMBL	K7KWE5	0.0	K7KWE5_SOYBN; Uncharacterized protein
STRING	GLYMA06G23902.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5466	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-113	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]