PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN23316.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GRF

Protein Properties

Length: 503aa MW: 53865.9 Da PI: 8.8495

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN23316.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.7	5.5e-25	124	167	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e KHN23316.1 124 DPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVE 167 79***************************************998 PP
2	QLQ	54.3	4e-19	72	104	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FT aQ+ +L++Q+++yKy++a++PvP++Ll + KHN23316.1 72 PFTSAQWRELERQAMIYKYMMASVPVPHDLLTP 104 8*****************************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.4E-11	71	107	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.567	72	107	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	8.2E-13	72	103	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.739	124	168	IPR014977	WRC domain
Pfam	PF08879	1.7E-20	125	167	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010114	Biological Process	response to red light
GO:0010218	Biological Process	response to far red light
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MSFTNHINLV SGASSVLGPA IDAGCGAAPP APVRTLQPFD ISSYTSSPTS TTTTFNFKPP 60 SAGVMAASLG FPFTSAQWRE LERQAMIYKY MMASVPVPHD LLTPSSRSSC MDGGFNLRLA 120 NSTDPEPGRC RRTDGKKWRC SRDVAPNHKY CERHMHRGRP RSRKPVEVNT NSTTTPTSVN 180 NNNHQIKKAR HECNNNPFAT PDVTAAISNP TSRKNGSSPH FLGSTTTQPY LDSSLSLDNF 240 GLKAASFDSV ASVSANKEPR GLEWMLNGDP ISLGASDSQW QSLMHNKDGM TSVSSCNTTE 300 SQYLNSLALY NSGLEQQNRR HPLFLNPLVV PMENLQPEKP RGFIDAWSNA ESNANTNTTN 360 KNSAASIGKL SLSSLDLSMG GAAVNEDVGN VNMGLGLMEP NGKTHTGTKI SLSNWQNPAP 420 WVASSLGGPL AEVLRSSTVT ATTTTNEATS NTPSPATTTH AESPSGVLQK TLVSLSDSSN 480 NSSPRVASSR ANSEMALLRF QSN

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MSFTNHINLV SGASSVLGPA IDAGCGAAPP APVRTLQPFD ISSYTSSPTS TTTTFNFKPP  60
SAGVMAASLG FPFTSAQWRE LERQAMIYKY MMASVPVPHD LLTPSSRSSC MDGGFNLRLA  120
NSTDPEPGRC RRTDGKKWRC SRDVAPNHKY CERHMHRGRP RSRKPVEVNT NSTTTPTSVN  180
NNNHQIKKAR HECNNNPFAT PDVTAAISNP TSRKNGSSPH FLGSTTTQPY LDSSLSLDNF  240
GLKAASFDSV ASVSANKEPR GLEWMLNGDP ISLGASDSQW QSLMHNKDGM TSVSSCNTTE  300
SQYLNSLALY NSGLEQQNRR HPLFLNPLVV PMENLQPEKP RGFIDAWSNA ESNANTNTTN  360
KNSAASIGKL SLSSLDLSMG GAAVNEDVGN VNMGLGLMEP NGKTHTGTKI SLSNWQNPAP  420
WVASSLGGPL AEVLRSSTVT ATTTTNEATS NTPSPATTTH AESPSGVLQK TLVSLSDSSN  480
NSSPRVASSR ANSEMALLRF QSN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN23316.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028236185.1	0.0	growth-regulating factor 7-like isoform X1
Swissprot	Q9FJB8	2e-38	GRF7_ARATH; Growth-regulating factor 7
TrEMBL	A0A445K967	0.0	A0A445K967_GLYSO; Growth-regulating factor 7 isoform A
STRING	GLYMA06G13960.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7324	28	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	2e-39	growth-regulating factor 7

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]