PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23185.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25405 Da    PI: 9.6434
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23185.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF663.8e-211865249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +i  ks  qvtfskRr g++KKA+EL++LC++e+av++fs+ +k + +
  KHN23185.1 18 KIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAVVVFSPADKAFSF 65
                57789999*********************************9987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.128969IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-29968IPR002100Transcription factor, MADS-box
CDDcd002656.82E-321077No hitNo description
SuperFamilySSF554552.35E-261090IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-161131IPR002100Transcription factor, MADS-box
PfamPF003191.6E-231865IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-163146IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-164667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSKNKKSSLG RQKIPIEKIP KKSHLQVTFS KRRSGLFKKA SELCTLCGVE IAVVVFSPAD  60
KAFSFGHPEV ESLIDRYTTR NPPQESSAHH LVEAHRNANV RDLNMQLSQV FNHLEIEKKR  120
GDDLDHARKA RQRQFWWESP IDELGLNELL QLKASIEELK LNIEKHASKF MIEHSSNIPS  180
SSLLGPNNGL GPLACYDTFE NKPGPGIGIA PSIPNAHYLA FRTGYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-18994187MEF2C
5f28_B9e-18994187MEF2C
5f28_C9e-18994187MEF2C
5f28_D9e-18994187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23185.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028182754.11e-168agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-53AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A0B2QP351e-167A0A0B2QP35_GLYSO; Agamous-like MADS-box protein AGL62
STRINGGLYMA10G40060.21e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-55AGAMOUS-like 62
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  3. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  4. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  5. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  6. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]