PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN22248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 77aa MW: 9131.07 Da PI: 6.0912 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.7 | 1.7e-10 | 3 | 45 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT eE ++ da + +G++ +W +a+ +g g++ ++k ++ KHN22248.1 3 WTREENRRFEDALAVHGPDdpnRWQHVANAVG-GKSVQEVKMHY 45 *****************99*************.********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.323 | 1 | 52 | IPR017884 | SANT domain |
SMART | SM00717 | 0.0082 | 3 | 51 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.20E-7 | 3 | 45 | No hit | No description |
SuperFamily | SSF46689 | 5.31E-12 | 3 | 56 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-5 | 3 | 45 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-8 | 3 | 45 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MGWTREENRR FEDALAVHGP DDPNRWQHVA NAVGGKSVQE VKMHYEIPQE DVIRIERDQI 60 PLPSYRGNER QIHNEQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-18 | 3 | 77 | 11 | 85 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN22248.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098411 | 1e-124 | BT098411.1 Soybean clone JCVI-FLGm-12O6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528087.1 | 3e-50 | protein RADIALIS-like 6 | ||||
Refseq | XP_028234794.1 | 3e-50 | protein RADIALIS-like 6 | ||||
Swissprot | Q1A173 | 1e-21 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A445K475 | 6e-49 | A0A445K475_GLYSO; Protein RADIALIS-like 6 | ||||
TrEMBL | C6TL35 | 6e-49 | C6TL35_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G03460.1 | 1e-49 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15365 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 3e-24 | RAD-like 6 |
Publications ? help Back to Top | |||
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