PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21617.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 424aa    MW: 47368.2 Da    PI: 7.3727
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21617.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.16.2e-26197249154
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                 kpr++W  eLH++Fv+av++L G ++A+Pk+i+e m+v+gLt+e+v+SHLQkYR
  KHN21617.1 197 KPRVVWIAELHSKFVNAVKKL-GLHQAVPKRIVEEMNVPGLTRENVASHLQKYR 249
                 79*******************.9******************************* PP
2Response_reg61.25.3e-21201221103
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vd +p+ ++ ++q+++  +y ev +++++++al+l+ e++  +Dlil+ + mp+m+G+e+l +  +e  ++p+iv++   ++ ++++a+++Ga 
    KHN21617.1  20 VLVVDNNPTDLDFIKQICNLCNY-EVSTCTESTQALNLVLERKdcIDLILIEVHMPTMNGYEFLHRASKEI-DVPVIVMSLDHSNYTVTRAVQLGAC 114
                   89*********************.***************887779*********************97766.8*******777789*********** PP

                   EEEESS-- CS
  Response_reg  96 dflsKpfd 103
                   df +Kp  
    KHN21617.1 115 DFWVKPLR 122
                   ******75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.2E-2716142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.6E-3017141No hitNo description
SMARTSM004483.2E-1518130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.79819134IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.0E-1820122IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.07E-1821120No hitNo description
PROSITE profilePS5129411.065194253IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-25195254IPR009057Homeodomain-like
SuperFamilySSF466896.09E-17195254IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23197250IPR006447Myb domain, plants
PfamPF002492.1E-6199249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MAQVSSFEKV QYQFPEKIRV LVVDNNPTDL DFIKQICNLC NYEVSTCTES TQALNLVLER  60
KDCIDLILIE VHMPTMNGYE FLHRASKEID VPVIVMSLDH SNYTVTRAVQ LGACDFWVKP  120
LRYYQFKNMW THVLRKSLKE NNIQTKDYVG SLEDGERSRK RGKDNSEFGS SSVVRDQSNS  180
SSKEAEESKH RVSSMKKPRV VWIAELHSKF VNAVKKLGLH QAVPKRIVEE MNVPGLTREN  240
VASHLQKYRD YLKRKSEMKE TQTQEHTEMQ LPNMVPGTTE SRSIRTLADP SVYGAQPPSN  300
ANVSVGAMQQ SLIHQQMMIS GNPASSVSRN IDYAQSSNPN PLGFLQIHDG NTLNQYTATE  360
ASISQQLQNS SLTSGAASSV SPYAYGSTSP ILSLSLGLPN TSATGLSNQN SSTDVVDNTK  420
NEDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-18197253157Transcription factor LUX
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21617.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358702e-44AC235870.2 Glycine max clone GM_WBb0130P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025984371.10.0uncharacterized protein LOC102670418
TrEMBLA0A445KTC20.0A0A445KTC2_GLYSO; Two-component response regulator ORR21
STRINGGLYMA05G34516.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14524517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-63response regulator 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]