PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN21578.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 465aa MW: 51175.9 Da PI: 6.9329

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN21578.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00091	110	129	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp+C+++F++ ++ H KHN21578.1 110 FECPICKQPFRSEEEVSAHV 129 89***********9999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	1.5E-8	25	52	No hit	No description
CDD	cd09212	3.23E-20	166	260	No hit	No description
SuperFamily	SSF143503	1.18E-17	174	260	IPR018997	PUB domain
SMART	SM00580	1.1E-18	177	244	IPR018997	PUB domain
Pfam	PF09409	1.2E-15	178	251	IPR018997	PUB domain
SuperFamily	SSF54236	1.6E-12	327	438	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	1.5E-8	342	436	No hit	No description
PROSITE profile	PS50033	9.854	354	438	IPR001012	UBX domain
Pfam	PF00789	1.3E-4	355	405	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MDDVKGKVKG FMKKVNNPFS SSSSGKFKGQ GRVLGSSSSS SPTNSNPTPR PHPNSQKPSS 60 SATPYPKPSP QKTDPYRTTE KPRKDDGFDP FDSLVTNSNR SQNGYSLDVF ECPICKQPFR 120 SEEEVSAHVD GCLNNPVERG GDDGNGASES DGGSNTNSDS EFEVCVETYS SGKPSEGSVD 180 VVLKLLRNIG REPANVKFRR IRMNNPKIKE AVGDVAGGVE LLSFVGFELR EENGETWAVM 240 EVPTEEQIKI IKKAIVLLES QLVQQGPPKR DDSPSATSAE MGPKAEPKLV DRQVKVFFAV 300 PERVAAKIEL PDSFYSLSAE EVSREAELRR KKIADSQLLI PKSLREKQAK ASRKRYTKAI 360 IRIQFPDGVV LQGVFAPWEP TAAIYKFVCS ALKEPGLEFE LMHPVLIQRR VIPHFPKAGE 420 NAKTIEEEDL VPSALIKFKP LETDSVVFTG LRNELLEISE PLVNG

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MDDVKGKVKG FMKKVNNPFS SSSSGKFKGQ GRVLGSSSSS SPTNSNPTPR PHPNSQKPSS  60
SATPYPKPSP QKTDPYRTTE KPRKDDGFDP FDSLVTNSNR SQNGYSLDVF ECPICKQPFR  120
SEEEVSAHVD GCLNNPVERG GDDGNGASES DGGSNTNSDS EFEVCVETYS SGKPSEGSVD  180
VVLKLLRNIG REPANVKFRR IRMNNPKIKE AVGDVAGGVE LLSFVGFELR EENGETWAVM  240
EVPTEEQIKI IKKAIVLLES QLVQQGPPKR DDSPSATSAE MGPKAEPKLV DRQVKVFFAV  300
PERVAAKIEL PDSFYSLSAE EVSREAELRR KKIADSQLLI PKSLREKQAK ASRKRYTKAI  360
IRIQFPDGVV LQGVFAPWEP TAAIYKFVCS ALKEPGLEFE LMHPVLIQRR VIPHFPKAGE  420
NAKTIEEEDL VPSALIKFKP LETDSVVFTG LRNELLEISE PLVNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	6e-13	309	438	23	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN21578.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235390	0.0	AC235390.1 Glycine max strain Williams 82 clone GM_WBb0116B02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028233919.1	0.0	plant UBX domain-containing protein 2-like
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A445KT85	0.0	A0A445KT85_GLYSO; Plant UBX domain-containing protein 2
STRING	GLYMA05G34970.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8944	25	29

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]