PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN21145.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 355aa MW: 39635.2 Da PI: 7.2762

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN21145.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.2	5.7e-11	52	93	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L+ ++L KHN21145.1 52 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDL 93 6889*************************8777776665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-8	49	125	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.094	51	95	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.9E-8	51	95	No hit	No description
Pfam	PF00170	3.7E-8	52	94	IPR004827	Basic-leucine zipper domain
CDD	cd14708	3.08E-21	53	103	No hit	No description
SuperFamily	SSF57959	4.9E-7	53	96	No hit	No description
PROSITE pattern	PS00036	0	56	71	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.2E-28	133	208	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MADKDAFCYP YHVDDCTSPQ ENLPNKGPSH SEMLPKNSRK GAGSTSEKPL DAKTLRRLAQ 60 NREAARKSRL RKKAYVQQLE SSRLKLTHLE QDLQRARSQG VFMGCGGAGG SLSSGAAMFD 120 MEYARWLEDD QRHMVELRSG LQVPLPDGEL RVIVDGYLSH YDEVFRLKGV AVKTDVFHLI 180 NGMWTSPAER CFLWIGGFKP SELITMLIPQ LEPLVEQQIM GIHGLRHSLV QAEEALTQGL 240 EQLQQSLVDT IAGSPVADGV QQMVAAMGKL GNLEGFVSQA DNLRQITLHQ LCRLLTVRQA 300 ARCFLVIGEY YGRLRALSSL WASRPRETLI SDDNSCQTTT ELQMVQSSQN HFSSF

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MADKDAFCYP YHVDDCTSPQ ENLPNKGPSH SEMLPKNSRK GAGSTSEKPL DAKTLRRLAQ  60
NREAARKSRL RKKAYVQQLE SSRLKLTHLE QDLQRARSQG VFMGCGGAGG SLSSGAAMFD  120
MEYARWLEDD QRHMVELRSG LQVPLPDGEL RVIVDGYLSH YDEVFRLKGV AVKTDVFHLI  180
NGMWTSPAER CFLWIGGFKP SELITMLIPQ LEPLVEQQIM GIHGLRHSLV QAEEALTQGL  240
EQLQQSLVDT IAGSPVADGV QQMVAAMGKL GNLEGFVSQA DNLRQITLHQ LCRLLTVRQA  300
ARCFLVIGEY YGRLRALSSL WASRPRETLI SDDNSCQTTT ELQMVQSSQN HFSSF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN21145.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	2e-93	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028195443.1	0.0	transcription factor TGA9-like isoform X2
Swissprot	Q93XM6	1e-174	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A0R0H381	0.0	A0A0R0H381_SOYBN; Uncharacterized protein
STRING	GLYMA12G09430.5	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-169	bZIP family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]