PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN19997.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 240aa    MW: 26966.9 Da    PI: 9.2572
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN19997.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-164491148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
       KHN19997.1 44 KGAWTKEEDHRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 91
                     79******************************99************97 PP
2Myb_DNA-binding55.81.1e-1797141147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eEd+l+++++ +lG++ W++Ia +++ gRt++++k++w+++
       KHN19997.1  97 RGNFSLEEDQLIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 141
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-233594IPR009057Homeodomain-like
PROSITE profilePS5129416.1973991IPR017930Myb domain
SuperFamilySSF466895.75E-2943138IPR009057Homeodomain-like
SMARTSM007178.1E-124393IPR001005SANT/Myb domain
PfamPF002493.3E-154491IPR001005SANT/Myb domain
CDDcd001672.61E-94691No hitNo description
PROSITE profilePS5129427.78192146IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2795146IPR009057Homeodomain-like
SMARTSM007171.5E-1696144IPR001005SANT/Myb domain
PfamPF002494.5E-1697141IPR001005SANT/Myb domain
CDDcd001674.93E-1299142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRKGAEMTSC CLEGYKNEGV GGGHIVGEHR MGRSPCCEKA HTNKGAWTKE EDHRLISYIR  60
AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF SLEEDQLIIK LHSLLGNKWS  120
LIAGRLPGRT DNEIKNYWNT HIRRKLLSRG IDPATHRPLN DDKVLERCPD LNLELTISPP  180
RQPQSDQHHL KPVGRNSNLC FACSLGLQNS KDHCSCALNT ANAASGHDFL ALKTSVLEMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-284314626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN19997.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5550570.0FJ555057.1 Glycine max transcription factor MYB047 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236232.21e-154transcription factor MYB047
SwissprotP813931e-104MYB08_ANTMA; Myb-related protein 308
TrEMBLE4W6961e-153E4W696_SOYBN; Transcription factor MYB047
STRINGGLYMA04G00550.11e-153(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.18e-94myb domain protein 32
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]