PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN18716.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 233aa MW: 27289.8 Da PI: 6.4081

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN18716.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	72	126	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++q+e Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k KHN18716.1 72 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWK 126 57788*************************************************9 PP
2	HD-ZIP_I/II	119.6	1.7e-38	72	163	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+++q++lLE+sF+ee kL+perK++l+reLglqprq+avWFqnrR R+ktkqlE+ y++Lk++yd +++e+++L++ev +L++ l+ KHN18716.1 72 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHLYDVLKHQYDVVSNEKQKLQEEVMKLKAMLS 163 69**************************************************************************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-19	59	130	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.253	68	128	IPR001356	Homeobox domain
SMART	SM00389	4.8E-17	70	132	IPR001356	Homeobox domain
CDD	cd00086	3.84E-16	71	129	No hit	No description
Pfam	PF00046	8.0E-16	72	126	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.4E-20	74	135	IPR009057	Homeodomain-like
PRINTS	PR00031	7.9E-5	99	108	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	103	126	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.9E-5	108	124	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.6E-9	128	162	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MELKERDLDR ELETDMDWHH GTKPLVPRPE TLSFFYNYNY NSPYPGVEVK QAALMETGEG 60 SVPALMDSRN KEKKKRLTNN QIELLERSFQ EEIKLDPERK MKLSRELGLQ PRQIAVWFQN 120 RRTRWKTKQL EHLYDVLKHQ YDVVSNEKQK LQEEVMKLKA MLSKEQGFGK QTFGCYTEIS 180 GEETVESTSE GLTLRGKSNI EHVADQGYCS FTVEDYNTTV SLPPHCHWPA VPY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	128	RRTRWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN18716.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-32	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028223827.1	1e-176	homeobox-leucine zipper protein ATHB-22-like
Swissprot	Q9LZR0	5e-45	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A445LDR1	1e-174	A0A445LDR1_GLYSO; Putative homeobox-leucine zipper protein ATHB-51
STRING	GLYMA03G34710.2	1e-174	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	6e-43	homeobox 51

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]