PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN15166.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YB | ||||||||
Protein Properties | Length: 157aa MW: 17422.6 Da PI: 4.347 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 77.3 | 2.3e-24 | 11 | 94 | 3 | 86 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++d+ lP a +s+i+k++lP + ++++da++++ ec +efi +v+se+++ c+re+++t++++ +l al lGf +yve++ + KHN15166.1 11 KEDASLPKATMSKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREDKRTVAPEHVLKALQVLGFGEYVEEVYAA 94 6899***************************************************************************98654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.9E-39 | 8 | 141 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.1E-35 | 12 | 144 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-21 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MEPMDIVGKS KEDASLPKAT MSKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE 60 VCNREDKRTV APEHVLKALQ VLGFGEYVEE VYAAYEQHKL ETMQDSLRGG GKWSNGAEMT 120 EEEALAEQQR MFAEARARMN GGAIASKQPD ADQSLDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 5e-34 | 12 | 136 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN15166.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT136794 | 1e-164 | BT136794.1 Lotus japonicus clone JCVI-FLLj-3M19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001350889.1 | 1e-113 | class 2 transcription repressor NC2 beta 1 isoform 1 | ||||
Refseq | XP_028231235.1 | 1e-113 | protein Dr1 homolog isoform X1 | ||||
Swissprot | P49592 | 2e-91 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | I1K186 | 1e-112 | I1K186_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G07750.1 | 1e-112 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4766 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 7e-84 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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