PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15166.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 157aa    MW: 17422.6 Da    PI: 4.347
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15166.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB77.32.3e-241194386
       NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86
                ++d+ lP a +s+i+k++lP + ++++da++++ ec +efi +v+se+++ c+re+++t++++ +l al  lGf +yve++ + 
  KHN15166.1 11 KEDASLPKATMSKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREDKRTVAPEHVLKALQVLGFGEYVEEVYAA 94
                6899***************************************************************************98654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.9E-398141IPR009072Histone-fold
SuperFamilySSF471133.1E-3512144IPR009072Histone-fold
PfamPF008081.9E-211479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MEPMDIVGKS KEDASLPKAT MSKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE  60
VCNREDKRTV APEHVLKALQ VLGFGEYVEE VYAAYEQHKL ETMQDSLRGG GKWSNGAEMT  120
EEEALAEQQR MFAEARARMN GGAIASKQPD ADQSLDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B5e-341213612133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15166.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1367941e-164BT136794.1 Lotus japonicus clone JCVI-FLLj-3M19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001350889.11e-113class 2 transcription repressor NC2 beta 1 isoform 1
RefseqXP_028231235.11e-113protein Dr1 homolog isoform X1
SwissprotP495922e-91NC2B_ARATH; Protein Dr1 homolog
TrEMBLI1K1861e-112I1K186_SOYBN; Uncharacterized protein
STRINGGLYMA05G07750.11e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.27e-84nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]