PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14502.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 840aa    MW: 93713.4 Da    PI: 6.7958
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14502.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55e-18290389198
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l ++
  KHN14502.1 290 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLIMG 386
                 89**************************555567778***************9989999999***9.********************876.77777777 PP

                 EE- CS
          B3  96 vfr 98 
                 +++
  KHN14502.1 387 FRK 389
                 765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-29283393IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.03E-18287390IPR015300DNA-binding pseudobarrel domain
CDDcd100179.25E-22288389No hitNo description
PROSITE profilePS5086311.166290391IPR003340B3 DNA binding domain
PfamPF023621.5E-15290389IPR003340B3 DNA binding domain
SMARTSM010191.2E-19290390IPR003340B3 DNA binding domain
PROSITE profilePS5105013.161519569IPR011124Zinc finger, CW-type
PfamPF074961.1E-8524566IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
CSSAYEQSTY CDMFHSNDSG WRECTSCDKR LHCGCIASMS QLELLDTGGV SCISCGRNSG  60
PQPIASNEKP NGSGTSKVQN VSTQQQCTSL ANQLTVRGMQ VGHYAENDEL QCWFKTHNVE  120
TDGPFAEMKP EILPSVGELG NTLISQFHCE SNGSSKASKA ENCKPETEMR DIYESLAQTN  180
LSMTLAAPLG NSNPFHSAVV DEREQSKTSP LLLGSRSHHL LPKPARSTIG TSLEANAGMV  240
SQIRVARPPA EGRGRNQLLP RYWPRITDQE LQQISGEYPT FSNSTIVPLF EKMLSASDAG  300
RIGRLVLPKA CAEAYFPPIS QPEGLPLRIQ DVKGKEWMFQ FRFWPNNNSR MYVLEGVTPC  360
IQSMQLQAGD TVTFSRMDPE GKLIMGFRKA TNSTAVQLQK GCSETHLNAL SKKWNSAGGD  420
MSWHNIDMPE SRKRDELPLP PVMVPEKKRT RNIGSKSKRL LIDSQDALEL KLTWEEAQDM  480
LRPPPTVKPS IVMIEDHVFE EYEEPPVFGK RSIFVVRSTG VNEQWTQCDS CSKWRKLPVD  540
VLTPPKWTCV ENLWDQSRCS CAAPNELNPR ELDNLLRLNK EFKKQRLAAS QRLALEHESS  600
GLDALANAAI LGDDASDSGR TSVVSTTKHP RHRPGCSCIV CIQPPSGKGK HKPTCTCNVC  660
MTVKRRFKTL MMRKKKRQSE REAEIAQRNQ LSWRTKDESE VDSTLRHLTP VDRLENEVRV  720
QNELDSRSQN HAVAEAAKGQ LDLNCQPDRE DVQAWPNNLS MTSLLEEANL PLETYLKRNG  780
LSSLISEQQT NSASNVQAQT TNDSEGKHNE DCGTALVIHE RESSPEENSG QDREQNNSLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-672643972131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1663674KRRFKTLMMRKK
2663676KRRFKTLMMRKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14502.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573404.10.0B3 domain-containing transcription repressor VAL2 isoform X2
RefseqXP_028237761.10.0B3 domain-containing transcription repressor VAL2-like
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A0B2Q3V00.0A0A0B2Q3V0_GLYSO; B3 domain-containing transcription repressor VAL2 (Fragment)
STRINGGLYMA01G32810.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  4. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  5. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]