PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13998.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 303aa    MW: 33897.7 Da    PI: 5.6562
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13998.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-32120176258
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+edp++++itYeg H h
  KHN13998.1 120 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPDTLIITYEGLHLH 176
                 8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182908.11E-27117176IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-29118176IPR003657WRKY domain
PROSITE profilePS5081127.164118179IPR003657WRKY domain
SMARTSM007742.1E-35119178IPR003657WRKY domain
PfamPF031064.4E-26120176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSKTMMEEVV MTTSWSEGSE DDDLVRELLD DGSPLLIEPP NTTTKASSSD DQDQAFNKFI  60
SNIYSGPTIS DIENALSVTN QRDHFPQLSS ARVSILERGL SKIENKYTLK IKCFGNVMGD  120
DGYKWRKYGQ KSIKNSPNPR SYYRCTNPRC SAKKQVERSN EDPDTLIITY EGLHLHFAYP  180
YFLMGQLQQS NSHPPIKKSK PISPQAQAQA HREDYVQEAQ SNATWGMMSS TSLDSTLEMA  240
QENLGSQGLL EDMVPFMVRN PSNNVNSAHT KFSCSSYSSP PTSPLWTSTY STTCYTVGLN  300
SST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-211201761571WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13998.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028213480.10.0probable WRKY transcription factor 49
TrEMBLA0A445FUX50.0A0A445FUX5_GLYSO; Putative WRKY transcription factor 49
STRINGGLYMA18G39970.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.19e-51WRKY DNA-binding protein 49
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]