PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN12199.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 354aa MW: 39409.5 Da PI: 5.7175 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.1 | 1.9e-28 | 20 | 72 | 1 | 53 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 kprl+WtpeLH+rF+ea +qLGG++kAtPk+++++m+++gLtl+h+kSHLQ + KHN12199.1 20 KPRLKWTPELHRRFIEATNQLGGEDKATPKSLMRVMGIPGLTLYHLKSHLQAF 72 79*************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-26 | 18 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.4E-14 | 19 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-19 | 20 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.7E-6 | 22 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.9E-21 | 121 | 167 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MDPQNMQNQT MHFVLSTDSK PRLKWTPELH RRFIEATNQL GGEDKATPKS LMRVMGIPGL 60 TLYHLKSHLQ AFIPLLLGKS QQLETCSDNK QEDYIETKSS SDGHCSREIS LGAQNQITEN 120 MQIAQALQMQ MEVQRKLYEQ IEVQKHLQLR IEAQGKYLQS VLKKAQEALA GYNSSPVGIE 180 LTKAELSQLV TIINDACPSS PISELTETRG LSLSCGERKR DRGTMCSLES SLTSSESSGR 240 KEEKQPMEEI VEFKSSNNVS FELPLMEIHT EDKASNGGLS SNEGSGRKRS LAATESDDGS 300 CVVEQPCGKR CGNKLLRKVK LSEMLDLNSQ CQSDMDSTGS KTLDLNCSLN FWEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-18 | 20 | 72 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-18 | 20 | 72 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-18 | 20 | 72 | 1 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-18 | 20 | 72 | 1 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-18 | 20 | 72 | 1 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-18 | 20 | 72 | 1 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-18 | 20 | 72 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-18 | 20 | 72 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-18 | 20 | 72 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-18 | 20 | 72 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-18 | 20 | 72 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-18 | 20 | 72 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN12199.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235379 | 0.0 | AC235379.1 Glycine max strain Williams 82 clone GM_WBb0110B11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520080.1 | 0.0 | myb family transcription factor PHL8 isoform X1 | ||||
Refseq | XP_028202441.1 | 0.0 | myb family transcription factor PHL8-like isoform X1 | ||||
Swissprot | F4I274 | 8e-73 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A0B2PWW9 | 0.0 | A0A0B2PWW9_GLYSO; Myb family transcription factor APL | ||||
STRING | GLYMA02G12070.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5218 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 1e-72 | G2-like family protein |
Publications ? help Back to Top | |||
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