PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN11866.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 399aa MW: 44130.4 Da PI: 8.7687 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.7 | 3.2e-16 | 237 | 283 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRd+iN+++ eL++l+P++ K +Ka++L ++++Y+k+Lq KHN11866.1 237 VHNQSERRRRDKINQRMKELQKLVPNS-----SKTDKASMLDEVIQYMKQLQ 283 6*************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.955 | 233 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-19 | 236 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.5E-14 | 237 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-18 | 238 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.05E-16 | 238 | 287 | No hit | No description |
SMART | SM00353 | 1.8E-18 | 239 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MSQRVPNCDV DDSNIPTASK FPLPNFNFIS HEVPMLGYQV GELPCKKGQP STYEGSNGNL 60 TTWDKPRTSG GTLESIVNQH VSENCYKLVA MDALVPCSKQ GTRKAVESGR LGACRESSST 120 RVASRARVAA QEEVGKRAGM VARLPTTLEL SGCKDWSVSG SETCRRELSV TFNSATTGSP 180 ENTTSAGRQC TGTTTNDDRD SISHLISQSE VPDEDYMAAK VERSSGSNKR IKANSVVHNQ 240 SERRRRDKIN QRMKELQKLV PNSSKTDKAS MLDEVIQYMK QLQAQVQMMN WMKMYTTMML 300 PITMQQQQQQ LKMSMMMAQM GMGMGMGMGM NKDMVMNMNS MNIPGIPPML PFPPFMPMVS 360 CGDQLQGTPE KSVTMDAYSK MASLYDQQLF HPPASSSKN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 246 | ERRRRD |
2 | 242 | 247 | RRRRDK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN11866.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031100 | 0.0 | KT031100.1 Glycine max clone HN_CCL_212 bHLH transcription factor (Glyma03g04000.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028237828.1 | 0.0 | transcription factor UNE10-like | ||||
TrEMBL | A0A0B2PR58 | 0.0 | A0A0B2PR58_GLYSO; Transcription factor UNE10 | ||||
STRING | GLYMA03G04000.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5676 | 33 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-42 | bHLH family protein |
Publications ? help Back to Top | |||
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