PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN11486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 292aa MW: 33595.7 Da PI: 9.7886 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55 | 1.5e-17 | 176 | 267 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f ++++++ + ++v+p +f++e ++k++ +tl ++ rsW vk+ ++++g++ l++GW +Fvk+n+Lk g ++vF+ +++++ +++v KHN11486.1 176 FIREMHPSYIHKYIMVMPGNFLTEDQQKEND--SVTLWISEERSWHVKFYTNRSGGQINLSTGWVDFVKDNNLKIGNVCVFEQIKKTRISFRVF 267 55566777777778********999877666..59999999********66888888*************************665444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.842 | 1 | 90 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.00E-9 | 1 | 88 | No hit | No description |
SMART | SM01019 | 1.3E-6 | 3 | 90 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.4E-14 | 10 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.1E-8 | 12 | 89 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.73E-15 | 12 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-21 | 168 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-22 | 169 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.14E-15 | 174 | 270 | No hit | No description |
PROSITE profile | PS50863 | 13.493 | 175 | 272 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.8E-15 | 175 | 269 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0012 | 176 | 272 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MQYTILTISS SQRIPRSFVN KCWEGISNPV LLLLPNGVEW KVKWKKLDAD ILLIEDWKEF 60 AEFCSLDKDH LLVFEYLRKS QFLVVIFDQN GLEMEYPLMG GTLDGDEKGN SLCQHKRAKS 120 PVPFSSSIKK VKGKTLTSGR GRGMMNAKRR CSNSNALKSS TALERAKAFR SENPFFIREM 180 HPSYIHKYIM VMPGNFLTED QQKENDSVTL WISEERSWHV KFYTNRSGGQ INLSTGWVDF 240 VKDNNLKIGN VCVFEQIKKT RISFRVFIFR DGEESSPSNF SGNLKIIINI VV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN11486.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020211029.2 | 1e-102 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A445F3A1 | 0.0 | A0A445F3A1_GLYSO; B3 domain-containing transcription factor VRN1 | ||||
STRING | GLYMA20G24211.1 | 1e-170 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14649 | 5 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-24 | B3 family protein |
Publications ? help Back to Top | |||
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