PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN10010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HSF | ||||||||
Protein Properties | Length: 213aa MW: 24798.1 Da PI: 7.8516 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 105.6 | 4.2e-33 | 38 | 134 | 2 | 102 |
HHHHHHHHHC.....TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeile.....deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl k+ye+le +++ ++++sw+++g+ fvv+ + ef++ Lp+yFkh+nf+SF+RQLn+YgFkk+++++ weFkh++F++g ++ KHN10010.1 38 FLLKTYELLEelsenEKDSTKIVSWNAEGTGFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKK---------WEFKHEKFQRGCRHI 125 9*********8888778999**************************************************998.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l +i rkk KHN10010.1 126 LGEITRKKC 134 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.2E-34 | 30 | 126 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.0E-41 | 34 | 132 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.98E-28 | 35 | 132 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 6.5E-29 | 38 | 132 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 82 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MADNYNVLEL NIGLGNNNNS KVGGHAGQSP RQRCPAPFLL KTYELLEELS ENEKDSTKIV 60 SWNAEGTGFV VWSPAEFSEL TLPRYFKHNN FSSFIRQLNT YGFKKISSKK WEFKHEKFQR 120 GCRHILGEIT RKKCEPSVFP AYLKSSSEEN NATSSMEENN DHHQLLMEEN KNLKKERLEL 180 QMQIDECKTL EMKLLECLSQ FMDSHQNKVR RLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1hks_A | 6e-16 | 34 | 132 | 4 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
1hkt_A | 6e-16 | 34 | 132 | 4 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
5d5u_B | 9e-16 | 24 | 132 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-16 | 24 | 132 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-16 | 24 | 132 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN10010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT145411 | 1e-132 | BT145411.1 Lotus japonicus clone JCVI-FLLj-13E6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028189362.1 | 1e-158 | heat stress transcription factor B-2a-like | ||||
TrEMBL | A0A445I6D9 | 1e-157 | A0A445I6D9_GLYSO; Heat shock factor protein HSF24 | ||||
STRING | GLYMA13G24860.1 | 1e-158 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 1e-36 | heat shock factor 4 |
Publications ? help Back to Top | |||
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