PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09034.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 331aa    MW: 37790.6 Da    PI: 4.3228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09034.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11170213654
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+r+N++++ Lr ++Pk +      K++  +iL  +++Y+k+L
  KHN09034.1 170 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYMKEL 213
                 589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.237164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14167223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9170213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-14171222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.18E-5171217No hitNo description
CDDcd048730.00287257298No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEFYDQDFLE ELMTLRRETW DTNPSTEENQ FFSNAWSFDC FDQNSLPYLP NSSCGQEVPQ  60
SYNNDYPFSE IYGSLLDESS PQIMDSYYGT LDITPLNTPP FLGQEDYPLS MMEEEDPGFL  120
GEELKNLELQ TTCKVEKTQS SEMPAFNMGT GLERKNNRSK KLQGQPSKNL MAERRRRKRL  180
NDRLSMLRAI VPKISKMDRT SILGDTIDYM KELLEKINNL QQVEVDSSMA GIFKDVKPNE  240
IIVRNSPKFE VERSVDTRVE ICCAGKPGLL LSTVNTVEAL GLEIQQCVIS CFNDFTMQAS  300
CSEELEQRAM LSSEDIKQAL FRSAGYGGRC L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172179ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09034.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0969920.0BT096992.1 Soybean clone JCVI-FLGm-21O6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526525.10.0transcription factor bHLH93
RefseqXP_028235606.10.0transcription factor bHLH93-like
SwissprotQ9LSL11e-81BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A445K7300.0A0A445K730_GLYSO; Transcription factor bHLH93
TrEMBLI1K9L10.0I1K9L1_SOYBN; Uncharacterized protein
STRINGGLYMA06G09670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.18e-84beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  5. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  6. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]