PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN08926.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 37927.9 Da PI: 6.9365 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.5 | 8.9e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrF Ptdeel+v+yL++kv+g++++l +i+evd+yk++Pw Lp k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g++ KHN08926.1 14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-PIIAEVDLYKFDPWVLPGKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT-EGRK 110 79**************************99.88***************7777899***********************************9999.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy g+apkg+kt+W+mheyrl KHN08926.1 111 VGIKKALVFYIGKAPKGSKTNWIMHEYRL 139 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-65 | 10 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.323 | 14 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MGVPERDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLPIIAEVD LYKFDPWVLP 60 GKAVFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120 IGKAPKGSKT NWIMHEYRLL DSSRKHNLGT AKLDDWVLCR IYKKNSSSQK VETNFLAMEC 180 SNGSSPSSSS HVDDMLGSLP EINDRCFTLP RVNSLRTMHQ QDEKFGSPNM GSGFFSDWVN 240 STDLDSISEF ESGCQTQRMV NYDCNDFFVP SLPPLGHVDY MVDAPLEEEV QSGVRTRRVD 300 GPGHFQPNPD TRLLPGSGDP FGFGFIMGQQ VGFGVRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-104 | 1 | 170 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-104 | 1 | 170 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN08926.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF657304 | 0.0 | KF657304.1 Glycine max NAC transcription factor (SNAC23) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001238234.2 | 0.0 | NAC domain protein NAC3 | ||||
Swissprot | A0A3Q7HH64 | 1e-127 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A0B2PHR5 | 0.0 | A0A0B2PHR5_GLYSO; NAC domain-containing protein 72 | ||||
STRING | GLYMA06G38410.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4429 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-115 | NAC family protein |
Publications ? help Back to Top | |||
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