PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08879.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 423aa    MW: 46930.5 Da    PI: 6.9747
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08879.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.29.7e-10136178345
                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                 + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  KHN08879.1 136 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 178
                 568899************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.5E-8129181No hitNo description
PfamPF077165.9E-7134180IPR004827Basic-leucine zipper domain
SMARTSM003381.8E-7134197IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415136180IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-7138181No hitNo description
PROSITE patternPS000360141156IPR004827Basic-leucine zipper domain
PfamPF141446.0E-30221295IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MEATNVHPSR ISEFGTLEQS LGFRVEDTIN LSRNPMFNQM KSNSQALGAD IQFGALNKSI  60
ATSDINLSAA IAGSQALVLQ KDSQPTLAST SAGRENWGET NLADASPRTD TSTDDTEDKN  120
QRPERGESSG SKDKSDQKTL RRLAQNREAA RKSRLRKKAY VQQLESSRLK LTQLEQELQR  180
ARQQGIFISS TGDQAQSMSG NGAMAFDVEY ARWLEEHNRQ TNELRAAINS HAGDIELRTI  240
VDNFMTQFDD IFRLKGIAAK ADVFHILSGM WKTPAERCFM WIGGFRSSEL LKLLESQLEP  300
LTEQQLMGIY NLQQSSQQAE DALSQGMDAL QQSLSETLAN GSPSTSGSSG NVASYMGQMA  360
MAMGKLGTLD GFLRQADNLR QQTLQQMLRI LTTRQSARAL LAISDYFSRL RALSSLWLAR  420
PRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08879.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026090.0AF402609.1 Phaseolus vulgaris TGA-type basic leucine zipper protein TGA2.2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001336398.10.0putative bZIP domain class transcription factor isoform 2
RefseqNP_001336401.10.0putative bZIP domain class transcription factor isoform 2
RefseqNP_001336402.10.0putative bZIP domain class transcription factor isoform 2
RefseqXP_028218102.10.0transcription factor TGA2.3-like isoform X2
RefseqXP_028218103.10.0transcription factor TGA2.3-like isoform X2
RefseqXP_028218104.10.0transcription factor TGA2.3-like isoform X2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0B2PMD90.0A0A0B2PMD9_GLYSO; Transcription factor HBP-1b(C1)
TrEMBLA0A445FFY00.0A0A445FFY0_GLYSO; TGACG-sequence-specific DNA-binding protein TGA-2.1 isoform A
TrEMBLI1N8S20.0I1N8S2_SOYBN; Uncharacterized protein
STRINGGLYMA19G31050.50.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-137TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]