PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN08723.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | E2F/DP | ||||||||
Protein Properties | Length: 398aa MW: 43803.1 Da PI: 4.5455 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 85.2 | 5.1e-27 | 80 | 145 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg KHN08723.1 80 RYDSSLGLLTKKFINLVKHAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIHWKG 145 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.5E-29 | 77 | 147 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.17E-17 | 80 | 143 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.2E-34 | 80 | 145 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.4E-24 | 82 | 145 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 4.03E-47 | 158 | 262 | No hit | No description |
SuperFamily | SSF144074 | 1.33E-32 | 158 | 262 | No hit | No description |
Pfam | PF16421 | 1.8E-33 | 161 | 260 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MKRKSGMNDS EGESLAQKWS NSPGYTNVSN VTNNSPFKTP VSAKGGRTQK AKASKGRSCP 60 PTPISNAGSP SPLTPASSCR YDSSLGLLTK KFINLVKHAE DGILDLNKAA ETLEVQKRRI 120 YDITNVLEGI GLIEKKLKNR IHWKGIESAT SGDVDGDISL LKAEVEKLSL EEQGIDDQIR 180 EMQERLRNLS ENENNQKCLF VTEEDIKDLP CFQNETLIAI KAPHGTTLEV PDPEEAVDYP 240 QRRYRIILRS TMGPIDVYLI SQFEEKFEEV NGAELPMIPL ASSSGSNEQL MTEIVTAECS 300 GKELEPQTQL SSHAFSDASQ EFAGGMMKIV PSDVDNDADY WLLSDADISI TDMWRTDSSV 360 DWNGVDMLHP DFGVISRPQT PSSGFAEVPS TAANSIQK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 2e-25 | 75 | 146 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN08723.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093046 | 1e-107 | BT093046.1 Soybean clone JCVI-FLGm-15I8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028183153.1 | 0.0 | transcription factor E2FA-like | ||||
Swissprot | Q9FNY0 | 1e-147 | E2FA_ARATH; Transcription factor E2FA | ||||
TrEMBL | A0A0B2PM78 | 0.0 | A0A0B2PM78_GLYSO; Transcription factor E2FA | ||||
TrEMBL | A0A445IJH8 | 0.0 | A0A445IJH8_GLYSO; Transcription factor E2FA isoform A | ||||
STRING | GLYMA10G09410.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1947 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36010.1 | 1e-141 | E2F transcription factor 3 |
Publications ? help Back to Top | |||
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