PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08165.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 405aa    MW: 46078.2 Da    PI: 6.8454
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08165.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM185.89.5e-58161431129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdee++++yL++kv+++++++  +i e+d++k+ePwdLpkk+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke+++ kg+l
  KHN08165.1  16 LPPGFRFHPTDEEIITYYLTEKVRNSSFSA-IAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNL 113
                 79*************************999.88***************99999********************************************** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                 vg+kktLvfy+grapkgekt+Wvmhe+rle
  KHN08165.1 114 VGMKKTLVFYRGRAPKGEKTNWVMHEFRLE 143
                 ***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-6213168IPR003441NAC domain
PROSITE profilePS5100558.59416167IPR003441NAC domain
PfamPF023651.8E-2917142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEEPIVVNKG EEPLDLPPGF RFHPTDEEII TYYLTEKVRN SSFSAIAIGE ADLNKCEPWD  60
LPKKAKIGEK EWYFFCQKDR KYPTGMRTNR ATESGYWKAT GKDKEIYKGK GNLVGMKKTL  120
VFYRGRAPKG EKTNWVMHEF RLEGKFASYN LPKAAKDEWV VSRVFHKNTD VKKSSTPGLL  180
RINSIGDDLL DYSSLPPLMD PPYGNTNTTN NTNPLSSSTK SQSEGYYLPS FSINNHQQQL  240
LIKPEDHHHH RSYNEIPTIN YTSNQANLSN NVNAMGNNTL SQPLNMFSAD YYVHQNRIKS  300
SIMPSVAGSD FVNNNNNHHE AILRAFAAKN NEHIQCKMEQ FSSNHSQDTG LSNDRNTTDT  360
SLLVSKQQDN NMGRNNNRAL YEDLEGPSSV APLSDLECLQ WDDDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-521417315171NO APICAL MERISTEM PROTEIN
1ut4_B4e-521417315171NO APICAL MERISTEM PROTEIN
1ut7_A4e-521417315171NO APICAL MERISTEM PROTEIN
1ut7_B4e-521417315171NO APICAL MERISTEM PROTEIN
3swm_A5e-521417318174NAC domain-containing protein 19
3swm_B5e-521417318174NAC domain-containing protein 19
3swm_C5e-521417318174NAC domain-containing protein 19
3swm_D5e-521417318174NAC domain-containing protein 19
3swp_A5e-521417318174NAC domain-containing protein 19
3swp_B5e-521417318174NAC domain-containing protein 19
3swp_C5e-521417318174NAC domain-containing protein 19
3swp_D5e-521417318174NAC domain-containing protein 19
4dul_A4e-521417315171NAC domain-containing protein 19
4dul_B4e-521417315171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08165.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312700.0KT031270.1 Glycine max clone HN_CCL_56 NAC transcription factor (Glyma16g04720.1_like1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554001.10.0NAC domain-containing protein 87
RefseqXP_028216105.10.0NAC domain-containing protein 87-like
SwissprotQ9FK441e-113NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A0B2PFX10.0A0A0B2PFX1_GLYSO; NAC domain-containing protein 100
STRINGGLYMA19G28515.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-105Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]