PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN03824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HSF | ||||||||
Protein Properties | Length: 346aa MW: 40261.5 Da PI: 5.6796 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.5 | 6e-35 | 42 | 133 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++++++d+ +++++sws++g+sfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F +g+++ll++i+ KHN03824.1 42 FLTKTFDVVDDPVTNHVVSWSRDGTSFVVWDPNTFSTSLLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEGFIRGHRHLLRNIR 129 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k KHN03824.1 130 RRKA 133 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 7.35E-35 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.5E-60 | 38 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.0E-38 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.7E-19 | 42 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-31 | 42 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-19 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 81 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-19 | 93 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MNYMYQVKEE YLESSPSSSY QLGGEFPAKP IEGLHDTGPP PFLTKTFDVV DDPVTNHVVS 60 WSRDGTSFVV WDPNTFSTSL LPRYFKHNNF SSFVRQLNTY GFRKIDPDKW EFANEGFIRG 120 HRHLLRNIRR RKAPSQLTQG HHCVEVGRFD LDKEIDRLRH DKLVLLMELV NLRKQQQKAR 180 MYIQEMEQRL QGTEIKQKQM MAFLARAIKN PTFIHQLLQK EKSKELEEAF TKKRRQIEQG 240 ARGFGESSSV KVEALEFGDS EFGISELEML AREMQGFGKG GIDREVGPEA LESQERLDRV 300 LDEEFWEELL FSEKFEGRLD IPTAEDKDED VIKVLANQLD LLDSSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 7e-24 | 40 | 131 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 8e-24 | 40 | 131 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-24 | 40 | 131 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-24 | 40 | 131 | 27 | 129 | Heat shock factor protein 1 |
5hdg_A | 6e-24 | 40 | 131 | 8 | 110 | Heat shock factor protein 1 |
5hdn_A | 6e-24 | 40 | 131 | 8 | 110 | Heat shock factor protein 1 |
5hdn_B | 6e-24 | 40 | 131 | 8 | 110 | Heat shock factor protein 1 |
5hdn_C | 6e-24 | 40 | 131 | 8 | 110 | Heat shock factor protein 1 |
5hdn_D | 6e-24 | 40 | 131 | 8 | 110 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN03824.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN896308 | 0.0 | JN896308.1 Glycine max heat shock transcription factor HSFA6b mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028183365.1 | 0.0 | heat stress transcription factor A-7a-like | ||||
Swissprot | Q9LUH8 | 1e-108 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A445IH35 | 0.0 | A0A445IH35_GLYSO; Heat stress transcription factor A-6b isoform A | ||||
STRING | GLYMA10G03530.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-101 | heat shock transcription factor A6B |
Publications ? help Back to Top | |||
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