PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN03740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 433aa MW: 46956 Da PI: 8.7772 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.9 | 1.1e-10 | 50 | 75 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++ ++C +++rtG C yG+rC+++H+ KHN03740.1 50 PGVPNCVYYMRTGVCGYGGRCRYNHP 75 5789*********************8 PP | |||||||
2 | zf-CCCH | 42 | 1.5e-13 | 96 | 121 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ KHN03740.1 96 GEPPCQYYLKTGTCKFGASCKFHHPK 121 579*********************96 PP | |||||||
3 | zf-CCCH | 38.9 | 1.4e-12 | 143 | 167 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+CkyG +CkF+H++ KHN03740.1 143 EKECSYYLKTGQCKYGISCKFHHPQ 167 679********************97 PP | |||||||
4 | zf-CCCH | 36.3 | 9.6e-12 | 292 | 318 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG Ck+G C+++H++ KHN03740.1 292 PGEPDCQYYLRTGDCKFGLACQYHHPQ 318 5789*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.774 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-5 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-8 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-4 | 55 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.051 | 94 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-7 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-11 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-5 | 99 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.849 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-10 | 143 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-5 | 146 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.436 | 291 | 319 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 291 | 318 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-9 | 293 | 318 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-5 | 296 | 319 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016740 | Molecular Function | transferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MDLYGRGPAR NVHNPVNQPE WRSPGTDTGL EESMWHLTLG GGGESYPERP GVPNCVYYMR 60 TGVCGYGGRC RYNHPHDRAA VVAAVRVTGD YPERLGEPPC QYYLKTGTCK FGASCKFHHP 120 KNGGEYLSQA PLNVYGYPLR SDEKECSYYL KTGQCKYGIS CKFHHPQPAG TSLPASAAQF 180 YQQVQSPTVP LPEQYVGASS SLRVARPPIL PGSYVQGAYG PVFLSPGVVQ FPGWNHYSAL 240 PGTQPGVGAT SLYGVTQLSS PTSAFARPYT LLPSSTGLSG SNLKEQLYPK RPGEPDCQYY 300 LRTGDCKFGL ACQYHHPQDH VVAQPLLSPV GLPLRPLGRC CLNWFLQHQR TFGLNWPELM 360 SGSKKESFSA RIPSSGNSSG TSVGLIFSQG GSVLLSDVQL SSQSSAPTNS SRSTRQSVLN 420 ILMATVQSFT IAV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN03740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093745 | 0.0 | BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518955.1 | 0.0 | zinc finger CCCH domain-containing protein 32 isoform X1 | ||||
Refseq | XP_028207352.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like isoform X1 | ||||
Swissprot | Q84W91 | 1e-156 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A445IGP7 | 0.0 | A0A445IGP7_GLYSO; Zinc finger CCCH domain-containing protein 32 isoform B | ||||
STRING | GLYMA02G17260.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-146 | C3H family protein |
Publications ? help Back to Top | |||
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