PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03378.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 1181aa    MW: 130868 Da    PI: 9.7965
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03378.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-075590340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W +eE e +++a +++G++ Wk++a  +  +R+ +++
       KHN03378.1 55 QWNKEELEHFYEAYRKYGKD-WKKVALAVH-NRSVEMV 90
                     6*****************99.********9.9998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-95299IPR009057Homeodomain-like
SMARTSM007170.006952100IPR001005SANT/Myb domain
PfamPF002491.8E-65590IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-45590IPR009057Homeodomain-like
CDDcd001671.13E-45690No hitNo description
PfamPF065842.5E-31640740IPR033471DIRP domain
SMARTSM011358.6E-53640741IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1181 aa     Download sequence    Send to blast
MAPSRKSRSV NKRFSTVREA ASSKDKITEN ASKNRLKVSP GIQKKRKLAD MLGPQWNKEE  60
LEHFYEAYRK YGKDWKKVAL AVHNRSVEMV EALYTMNRAY LSLPEGTASV VGLIAMMTDH  120
YSVLGGSDSG KESNDDAEIS KKSQKRLRGK HLSDSKALEG HFSDHSQSHS VASGDGCLSL  180
LKKRHSGIRL HAVRKRTPRV PISYSIGKDN GDRFFSSARQ GSKQMVDTND VAHKVALALT  240
EASQRGGSSK ISGSPDKKFV PSLGLKSGKK HPKSEIAGAN FCSSDLDDGS SELSLGSTEG  300
NNEDYSRKTI HRSGRENTGR ERNQEKKIKK YGKNFETGEN LNKHLNDVKE ASSGTDDGKN  360
LSFIKSDFVT DFADAKNARS SYKGSRTKSK KLRLEKDEGS AFDALKTLAD LSLMLPVTNP  420
DTESSAQFKE GNHDAVDESK METHKVFPRI ESTASSKLGK VFSDNGVAVP EAEGAHQLNA  480
GFRKRKQKSF NLKYDEIHTG SHLSGSQKSK ATDEVKKSIV KGKRSSVSTA HSRQLKGVKS  540
LGNLSSSAND KGEKDDSSFS LMKVSSTNQG GPLNRGKPRR KMEKPKPMVQ QDLVVSRNIF  600
SSQHKKSIAS LQDGSYSQKG KLINCLSSYQ MRRWCTLEWF YSAIDYPWFS KREFVEYLDH  660
VGLGHVPRLT RIEWGVIRSS LGRPRRFSEQ FLIEEKNKLN QYRESVRSHY AEILSGTKEG  720
LPTDLAQPLI VGQRVIAIHP KTREIHDGSV LTVDHCRYRV QFDQPELGVE FVMDIDCMPL  780
YPFENMPTSL IQHNISSAQI NQDFIELKPN GKLKQRKVAG HTILSPSENL DTIKNLHIPP  840
TMHGSSTLSK QVFSSSSKSQ PKVVCSEIGI GNAQLASSSQ PSLLDHVHSK EADILAISEL  900
NRALDKKELV LSELKHMNDG VSESQKYGDN SVKDSEPFKR NYASVLKQLT EANEQVSSAL  960
FCLRQRNTYQ ASSSVLSLKP MANFDDPSGQ ASSSNCSACH NQESISQSHI TEIVESSRRK  1020
ARMMVVQATQ AMSNLRKTES KVERIEDAIN FINNQLSVDE PTASATTFLP TDSFSLASQD  1080
QLTASVLNPL ASCHVQDAEL NSSSDQNEMK IPSELISHCL ATLFVIQKCT ERQFPPADVA  1140
QVLDSAVTSL QPLSLKNLPI YGEIQKCMGI IRNQILALIP T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1576581KPRRKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03378.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-112AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550195.10.0protein ALWAYS EARLY 3 isoform X1
RefseqXP_028209208.10.0protein ALWAYS EARLY 3-like isoform X1
TrEMBLA0A445G0T50.0A0A445G0T5_GLYSO; Protein ALWAYS EARLY 3 isoform A
TrEMBLK7MJL10.0K7MJL1_SOYBN; Uncharacterized protein
STRINGGLYMA17G02741.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]